Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_O15
(303 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U00054-3|AAM48546.1| 12268|Caenorhabditis elegans Hypothetical p... 30 0.37
U00054-2|AAA50715.2| 13100|Caenorhabditis elegans Hypothetical p... 30 0.37
AY117398-1|AAM78593.1| 13100|Caenorhabditis elegans mesocentin p... 30 0.37
Z49889-5|CAA90070.1| 2207|Caenorhabditis elegans Hypothetical pr... 28 1.5
Z49868-5|CAA90032.1| 2207|Caenorhabditis elegans Hypothetical pr... 28 1.5
L41807-1|AAA67369.1| 402|Caenorhabditis elegans fatty acid desa... 27 2.6
AL132951-8|CAC44309.1| 402|Caenorhabditis elegans Hypothetical ... 27 2.6
Z47808-3|CAA87775.1| 360|Caenorhabditis elegans Hypothetical pr... 26 4.5
U51998-7|AAA96080.2| 769|Caenorhabditis elegans Hypothetical pr... 26 4.5
U51998-6|ABS83845.1| 825|Caenorhabditis elegans Hypothetical pr... 26 4.5
Z92838-5|CAB07404.2| 578|Caenorhabditis elegans Hypothetical pr... 25 7.9
>U00054-3|AAM48546.1| 12268|Caenorhabditis elegans Hypothetical protein
K07E12.1b protein.
Length = 12268
Score = 29.9 bits (64), Expect = 0.37
Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 3/60 (5%)
Frame = +3
Query: 108 DGSLLTIGIDDTLRRAMPQDEGGVPAY---TDSAIPLGSQPRAMDHLIDEDVTIVATVNE 278
DG + + +DD+ +A P DE G AY PLG+ + + +D TI+ +E
Sbjct: 10654 DGHYVLVPVDDSTIKAFPTDESGNVAYPITRPDGTPLGTD--SSGSFVTDDGTIIENDDE 10711
>U00054-2|AAA50715.2| 13100|Caenorhabditis elegans Hypothetical protein
K07E12.1a protein.
Length = 13100
Score = 29.9 bits (64), Expect = 0.37
Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 3/60 (5%)
Frame = +3
Query: 108 DGSLLTIGIDDTLRRAMPQDEGGVPAY---TDSAIPLGSQPRAMDHLIDEDVTIVATVNE 278
DG + + +DD+ +A P DE G AY PLG+ + + +D TI+ +E
Sbjct: 10699 DGHYVLVPVDDSTIKAFPTDESGNVAYPITRPDGTPLGTD--SSGSFVTDDGTIIENDDE 10756
>AY117398-1|AAM78593.1| 13100|Caenorhabditis elegans mesocentin protein.
Length = 13100
Score = 29.9 bits (64), Expect = 0.37
Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 3/60 (5%)
Frame = +3
Query: 108 DGSLLTIGIDDTLRRAMPQDEGGVPAY---TDSAIPLGSQPRAMDHLIDEDVTIVATVNE 278
DG + + +DD+ +A P DE G AY PLG+ + + +D TI+ +E
Sbjct: 10699 DGHYVLVPVDDSTIKAFPTDESGNVAYPITRPDGTPLGTD--SSGSFVTDDGTIIENDDE 10756
>Z49889-5|CAA90070.1| 2207|Caenorhabditis elegans Hypothetical
protein W07E11.1 protein.
Length = 2207
Score = 27.9 bits (59), Expect = 1.5
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = -2
Query: 302 LTTDDHRQLVNGGHDGDVLVDEVVHRTRLRPER 204
LT DDH L + D+ +++VV + RL+P R
Sbjct: 415 LTDDDHLYLSSEVGVNDIPIEKVVKKDRLKPGR 447
>Z49868-5|CAA90032.1| 2207|Caenorhabditis elegans Hypothetical
protein W07E11.1 protein.
Length = 2207
Score = 27.9 bits (59), Expect = 1.5
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = -2
Query: 302 LTTDDHRQLVNGGHDGDVLVDEVVHRTRLRPER 204
LT DDH L + D+ +++VV + RL+P R
Sbjct: 415 LTDDDHLYLSSEVGVNDIPIEKVVKKDRLKPGR 447
>L41807-1|AAA67369.1| 402|Caenorhabditis elegans fatty acid
desaturase protein.
Length = 402
Score = 27.1 bits (57), Expect = 2.6
Identities = 24/76 (31%), Positives = 35/76 (46%)
Frame = -2
Query: 257 GDVLVDEVVHRTRLRPERDGTIRVSRNTAFILRHCPPERVVDADGEERAVPARTHAVDLV 78
GDVLVD R L E++ V+ NT P ++ D RA+PA DLV
Sbjct: 18 GDVLVDA---RASLE-EKEAPRDVNANTKQATTEEPRIQLPTVDAFRRAIPAHCFERDLV 73
Query: 77 PVTLTHHVLTFTSLNV 30
++ + V F +L +
Sbjct: 74 K-SIRYLVQDFAALTI 88
>AL132951-8|CAC44309.1| 402|Caenorhabditis elegans Hypothetical
protein Y67H2A.8 protein.
Length = 402
Score = 27.1 bits (57), Expect = 2.6
Identities = 24/76 (31%), Positives = 35/76 (46%)
Frame = -2
Query: 257 GDVLVDEVVHRTRLRPERDGTIRVSRNTAFILRHCPPERVVDADGEERAVPARTHAVDLV 78
GDVLVD R L E++ V+ NT P ++ D RA+PA DLV
Sbjct: 18 GDVLVDA---RASLE-EKEAPRDVNANTKQATTEEPRIQLPTVDAFRRAIPAHCFERDLV 73
Query: 77 PVTLTHHVLTFTSLNV 30
++ + V F +L +
Sbjct: 74 K-SIRYLVQDFAALTI 88
>Z47808-3|CAA87775.1| 360|Caenorhabditis elegans Hypothetical
protein D2013.3 protein.
Length = 360
Score = 26.2 bits (55), Expect = 4.5
Identities = 11/48 (22%), Positives = 26/48 (54%)
Frame = -2
Query: 293 DDHRQLVNGGHDGDVLVDEVVHRTRLRPERDGTIRVSRNTAFILRHCP 150
D + L+ G H G V V + + R + ++ T+++++ + ++ CP
Sbjct: 60 DGDQMLLFGSHSGSVSVAKYKYLDRKKWKKPMTLKLAKQSLKTIKWCP 107
>U51998-7|AAA96080.2| 769|Caenorhabditis elegans Hypothetical
protein C12D12.1a protein.
Length = 769
Score = 26.2 bits (55), Expect = 4.5
Identities = 19/70 (27%), Positives = 29/70 (41%)
Frame = -3
Query: 298 PPTITVNSLTVATMVTSSSMRWSIARGCDPSGMALSV*AGTPPSSCGIARLSVSSMPMVR 119
PP T + LT T T + PS + TPP++ +A + S P+V
Sbjct: 564 PPVTTTSLLTTLTTPTVP-----VTTTVVPSSATVPT---TPPTTVTVAATTTSKAPVVT 615
Query: 118 SEPSLPARMP 89
+ P+L P
Sbjct: 616 TSPTLAPTSP 625
>U51998-6|ABS83845.1| 825|Caenorhabditis elegans Hypothetical
protein C12D12.1c protein.
Length = 825
Score = 26.2 bits (55), Expect = 4.5
Identities = 19/70 (27%), Positives = 29/70 (41%)
Frame = -3
Query: 298 PPTITVNSLTVATMVTSSSMRWSIARGCDPSGMALSV*AGTPPSSCGIARLSVSSMPMVR 119
PP T + LT T T + PS + TPP++ +A + S P+V
Sbjct: 620 PPVTTTSLLTTLTTPTVP-----VTTTVVPSSATVPT---TPPTTVTVAATTTSKAPVVT 671
Query: 118 SEPSLPARMP 89
+ P+L P
Sbjct: 672 TSPTLAPTSP 681
>Z92838-5|CAB07404.2| 578|Caenorhabditis elegans Hypothetical
protein T03D8.6 protein.
Length = 578
Score = 25.4 bits (53), Expect = 7.9
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = -3
Query: 196 LSV*AGTPPSSCGIARLSVSSM 131
L++ G PPSS G+ +L VS+M
Sbjct: 277 LTMCGGPPPSSFGVTQLIVSAM 298
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,714,060
Number of Sequences: 27780
Number of extensions: 99618
Number of successful extensions: 330
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 310
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 330
length of database: 12,740,198
effective HSP length: 70
effective length of database: 10,795,598
effective search space used: 323867940
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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