Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_O15
         (303 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    23   1.1  
AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    21   3.3  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    21   3.3  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    21   3.3  
DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II lar...    20   5.8  

>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 22.6 bits (46), Expect = 1.1
 Identities = 8/25 (32%), Positives = 13/25 (52%)
 Frame = -2

Query: 155 CPPERVVDADGEERAVPARTHAVDL 81
           C  ERV+    +E  VP+    +D+
Sbjct: 356 CEDERVISIPDKEITVPSNEETIDI 380


>AY739659-1|AAU85298.1|  288|Apis mellifera
          hyperpolarization-activated ion channelvariant T
          protein.
          Length = 288

 Score = 21.0 bits (42), Expect = 3.3
 Identities = 6/6 (100%), Positives = 6/6 (100%)
 Frame = -3

Query: 28 HWVIHP 11
          HWVIHP
Sbjct: 78 HWVIHP 83


>AY739658-1|AAU85297.1|  664|Apis mellifera
          hyperpolarization-activated ion channelvariant L
          protein.
          Length = 664

 Score = 21.0 bits (42), Expect = 3.3
 Identities = 6/6 (100%), Positives = 6/6 (100%)
 Frame = -3

Query: 28 HWVIHP 11
          HWVIHP
Sbjct: 78 HWVIHP 83


>AY280848-1|AAQ16312.1|  632|Apis mellifera
          hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 21.0 bits (42), Expect = 3.3
 Identities = 6/6 (100%), Positives = 6/6 (100%)
 Frame = -3

Query: 28 HWVIHP 11
          HWVIHP
Sbjct: 78 HWVIHP 83


>DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II large
           subunit protein.
          Length = 296

 Score = 20.2 bits (40), Expect = 5.8
 Identities = 7/17 (41%), Positives = 10/17 (58%)
 Frame = +3

Query: 201 IPLGSQPRAMDHLIDED 251
           IP G + R + H I +D
Sbjct: 259 IPFGFRKRTLPHFIKDD 275


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 65,978
Number of Sequences: 438
Number of extensions: 1151
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 49
effective length of database: 124,881
effective search space used:  6368931
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)