Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_O14
         (424 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z69302-5|CAA93262.1|  189|Caenorhabditis elegans Hypothetical pr...   195   9e-51
U76402-1|AAB39734.1|  777|Caenorhabditis elegans degenerin protein.    28   3.2  
U40798-3|AAA81473.2|  777|Caenorhabditis elegans Uncoordinated p...    28   3.2  
U20555-1|AAC46918.1|  839|Caenorhabditis elegans zinc finger pro...    27   4.2  
AC025724-8|AAG23381.1|  460|Caenorhabditis elegans Hypothetical ...    27   5.5  
U80839-15|AAB37911.1|  430|Caenorhabditis elegans Hypothetical p...    27   7.3  
U64847-11|AAB04878.2|  151|Caenorhabditis elegans Hypothetical p...    27   7.3  
U28739-11|AAR25657.1|  487|Caenorhabditis elegans Hypothetical p...    26   9.7  
U28739-10|AAR25656.1|  683|Caenorhabditis elegans Hypothetical p...    26   9.7  

>Z69302-5|CAA93262.1|  189|Caenorhabditis elegans Hypothetical
           protein F40F8.10 protein.
          Length = 189

 Score =  195 bits (476), Expect = 9e-51
 Identities = 94/125 (75%), Positives = 105/125 (84%)
 Frame = +2

Query: 50  RVPSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTL 229
           R+ +V SK   +PRRPFEK RLDQELK+IG +GL+NKREVWRVKYTLA++RKAARELLTL
Sbjct: 3   RLKTVQSKVTKSPRRPFEKERLDQELKLIGTFGLKNKREVWRVKYTLAKVRKAARELLTL 62

Query: 230 EEKDPKRLFEGNAXXXXXXXXXXXDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSI 409
           E+KDPKRLFEGNA           DE +MKLDYVLGLK+EDFLERRLQTQVFK GLAKSI
Sbjct: 63  EDKDPKRLFEGNALLRRLVKIGVLDETKMKLDYVLGLKVEDFLERRLQTQVFKLGLAKSI 122

Query: 410 HHARI 424
           HHARI
Sbjct: 123 HHARI 127


>U76402-1|AAB39734.1|  777|Caenorhabditis elegans degenerin protein.
          Length = 777

 Score = 27.9 bits (59), Expect = 3.2
 Identities = 13/32 (40%), Positives = 14/32 (43%), Gaps = 1/32 (3%)
 Frame = -3

Query: 239 PSPRVSTVHGQPYGCERACT*RATLHAC-CGD 147
           P P +   H  P GC R C     L  C CGD
Sbjct: 540 PVPYIYNEHYSPEGCHRNCFQLKVLEICGCGD 571


>U40798-3|AAA81473.2|  777|Caenorhabditis elegans Uncoordinated
           protein 8 protein.
          Length = 777

 Score = 27.9 bits (59), Expect = 3.2
 Identities = 13/32 (40%), Positives = 14/32 (43%), Gaps = 1/32 (3%)
 Frame = -3

Query: 239 PSPRVSTVHGQPYGCERACT*RATLHAC-CGD 147
           P P +   H  P GC R C     L  C CGD
Sbjct: 540 PVPYIYNEHYSPEGCHRNCFQLKVLEICGCGD 571


>U20555-1|AAC46918.1|  839|Caenorhabditis elegans zinc finger
           protein protein.
          Length = 839

 Score = 27.5 bits (58), Expect = 4.2
 Identities = 17/69 (24%), Positives = 30/69 (43%), Gaps = 1/69 (1%)
 Frame = -3

Query: 383 TPESEDGAPRSPQSSNRAHNPVSSVSHQALRP*PDDVVE-HCLQTIS*DPSPRVSTVHGQ 207
           T  +  GAP +    N    P ++ +  A  P    V   + L  +S + +  +  ++  
Sbjct: 749 TTAASSGAPVNSNIQNHRATPSTAGAPMAATPIMTAVTSANELAALSPERAQALLNMYRM 808

Query: 206 PYGCERACT 180
           P GC+R CT
Sbjct: 809 PLGCQRCCT 817


>AC025724-8|AAG23381.1|  460|Caenorhabditis elegans Hypothetical
           protein Y67D8C.2 protein.
          Length = 460

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = -3

Query: 71  WKIPMVPCCSPSWRARLNTRLPR 3
           W +  VP CS  WR+R     PR
Sbjct: 432 WDVSQVPSCSQDWRSRHVLFTPR 454


>U80839-15|AAB37911.1|  430|Caenorhabditis elegans Hypothetical
           protein ZC204.2 protein.
          Length = 430

 Score = 26.6 bits (56), Expect = 7.3
 Identities = 15/33 (45%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
 Frame = -3

Query: 407 LTSQDQP*TPESEDGAP-RSPQSSNRAHNPVSS 312
           L+S  +P TPE    AP +SP+S+  A +P+SS
Sbjct: 173 LSSSTEPRTPEESHCAPEKSPESTENA-SPLSS 204


>U64847-11|AAB04878.2|  151|Caenorhabditis elegans Hypothetical
           protein F08F3.1 protein.
          Length = 151

 Score = 26.6 bits (56), Expect = 7.3
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = +2

Query: 53  VPSVFSKTYVTPRRPFEKARLDQELKI 133
           VP   ++T VTP RP EK +  ++++I
Sbjct: 74  VPVFHNETTVTPERPIEKKKRVRQIQI 100


>U28739-11|AAR25657.1|  487|Caenorhabditis elegans Hypothetical
           protein C17G10.6b protein.
          Length = 487

 Score = 26.2 bits (55), Expect = 9.7
 Identities = 11/25 (44%), Positives = 18/25 (72%)
 Frame = +3

Query: 3   TREPRIETSSPRW*TTGYHRYFPKH 77
           T++P+I+T++P W   G HR  P+H
Sbjct: 46  TKDPKIKTTTPPW-VRGRHR--PRH 67


>U28739-10|AAR25656.1|  683|Caenorhabditis elegans Hypothetical
           protein C17G10.6a protein.
          Length = 683

 Score = 26.2 bits (55), Expect = 9.7
 Identities = 11/25 (44%), Positives = 18/25 (72%)
 Frame = +3

Query: 3   TREPRIETSSPRW*TTGYHRYFPKH 77
           T++P+I+T++P W   G HR  P+H
Sbjct: 97  TKDPKIKTTTPPW-VRGRHR--PRH 118


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,146,237
Number of Sequences: 27780
Number of extensions: 176051
Number of successful extensions: 610
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 586
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 610
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 692685370
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)