Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_O13
(442 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC16C6.11 |rpl3201|rpl32-1|60S ribosomal protein L32|Schizosac... 129 2e-31
SPAC3H5.10 |rpl3202|rpl32-2, rpl32|60S ribosomal protein L32|Sch... 129 2e-31
SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gc... 26 2.2
SPAC1002.03c |gls2||glucosidase II Gls2|Schizosaccharomyces pomb... 25 5.2
SPAC9.05 |mfh1||ATP-dependent DNA helicase Mfh1 |Schizosaccharom... 25 5.2
SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase Hrp1|Schizosac... 25 6.8
SPAC15A10.01 |atm1|SPAC8C9.18|ABC family iron transporter Atm1|S... 25 6.8
SPBC12C2.13c |fnx1|SPBC21D10.04c|MFS multidrug efflux transporte... 25 6.8
SPAC14C4.07 |||membrane transporter|Schizosaccharomyces pombe|ch... 24 9.0
>SPBC16C6.11 |rpl3201|rpl32-1|60S ribosomal protein
L32|Schizosaccharomyces pombe|chr 2|||Manual
Length = 127
Score = 129 bits (312), Expect = 2e-31
Identities = 57/100 (57%), Positives = 79/100 (79%)
Frame = +1
Query: 142 TWRKPRGIDNRVRRRFKGQYLMPNIGYGSNKKTRHMLPSGFRKVLVHNVRELEILMMQNR 321
+WRKPRGID+ VRRRF+G MP IGYG+NKKTR+ +P+G + LV NV ++E+L+M N+
Sbjct: 28 SWRKPRGIDSCVRRRFRGTISMPKIGYGNNKKTRYCMPNGLKAFLVRNVSDVELLLMHNK 87
Query: 322 KYCAEIAHGVSSKKRKAIVERAQQLSIRVTNAAARLRSQD 441
Y AEIA VS++KR IVE+A+ L ++VTNA A++RSQ+
Sbjct: 88 TYAAEIASNVSARKRVEIVEKARALGVKVTNAGAKVRSQE 127
Score = 30.3 bits (65), Expect = 0.14
Identities = 13/20 (65%), Positives = 16/20 (80%)
Frame = +3
Query: 75 IVKKRTKRFIRHQSDRYDKL 134
IVKKRTK F RHQSD + ++
Sbjct: 6 IVKKRTKPFKRHQSDLFKRV 25
>SPAC3H5.10 |rpl3202|rpl32-2, rpl32|60S ribosomal protein
L32|Schizosaccharomyces pombe|chr 1|||Manual
Length = 127
Score = 129 bits (311), Expect = 2e-31
Identities = 57/100 (57%), Positives = 79/100 (79%)
Frame = +1
Query: 142 TWRKPRGIDNRVRRRFKGQYLMPNIGYGSNKKTRHMLPSGFRKVLVHNVRELEILMMQNR 321
+WRKPRGID+ VRRRF+G MP IGYG+NKKTR+ +P+G + LV NV ++E+L+M N+
Sbjct: 28 SWRKPRGIDSCVRRRFRGTISMPKIGYGNNKKTRYCMPNGLKAFLVRNVSDVELLLMHNK 87
Query: 322 KYCAEIAHGVSSKKRKAIVERAQQLSIRVTNAAARLRSQD 441
Y AEIA VS++KR IVE+A+ L ++VTNA A++RSQ+
Sbjct: 88 TYAAEIAGNVSARKRVEIVEKARALGVKVTNAGAKVRSQE 127
Score = 32.7 bits (71), Expect = 0.026
Identities = 13/20 (65%), Positives = 17/20 (85%)
Frame = +3
Query: 75 IVKKRTKRFIRHQSDRYDKL 134
I+KKRTK F RHQSDR+ ++
Sbjct: 6 IIKKRTKPFKRHQSDRFKRV 25
>SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gcn2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1576
Score = 26.2 bits (55), Expect = 2.2
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = -1
Query: 364 VFSRRRHVRFPRSISCSASSGSPVRERCGP 275
VFS R++RF S S S SP + GP
Sbjct: 1296 VFSMLRYIRFHNSKQSSKHSPSPTLKSVGP 1325
>SPAC1002.03c |gls2||glucosidase II Gls2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 923
Score = 25.0 bits (52), Expect = 5.2
Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
Frame = -2
Query: 435 GTETSGRVGHPDAEL-LGTLDYSL--PFFRGDAMCDFRAVFPVLH 310
G + +G G+PDAEL + + ++ PFFR A D + P L+
Sbjct: 627 GADVAGFFGNPDAELFVRWYETAIFYPFFRAHAHIDTKRREPWLY 671
>SPAC9.05 |mfh1||ATP-dependent DNA helicase Mfh1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 834
Score = 25.0 bits (52), Expect = 5.2
Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 3/34 (8%)
Frame = -3
Query: 116 RLVTNKSFRPLFDDCRSVNRSDS---HFKLFH*E 24
R++ ++++RPL DD + R S H KL H E
Sbjct: 385 RIINHENYRPLMDDIEILLRDQSFVGHPKLEHLE 418
>SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase
Hrp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1373
Score = 24.6 bits (51), Expect = 6.8
Identities = 12/34 (35%), Positives = 18/34 (52%), Gaps = 3/34 (8%)
Frame = +2
Query: 254 PAVFVKSWSTTFANWR---S**CRTGNTARKSHM 346
P V +W T ANW + C TGNT ++++
Sbjct: 447 PLSTVPAWQETLANWTPDLNSICYTGNTESRANI 480
>SPAC15A10.01 |atm1|SPAC8C9.18|ABC family iron transporter
Atm1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 693
Score = 24.6 bits (51), Expect = 6.8
Identities = 9/31 (29%), Positives = 18/31 (58%)
Frame = +1
Query: 202 LMPNIGYGSNKKTRHMLPSGFRKVLVHNVRE 294
++ NIGYG+ K + + +K +H++ E
Sbjct: 533 ILYNIGYGNPKASNDEIVEAAKKAKIHDIIE 563
>SPBC12C2.13c |fnx1|SPBC21D10.04c|MFS multidrug efflux
transporter|Schizosaccharomyces pombe|chr 2|||Manual
Length = 531
Score = 24.6 bits (51), Expect = 6.8
Identities = 8/17 (47%), Positives = 14/17 (82%)
Frame = -3
Query: 131 FIITIRLVTNKSFRPLF 81
+I+T L+TN +F+PL+
Sbjct: 70 YIVTAYLITNTAFQPLY 86
>SPAC14C4.07 |||membrane transporter|Schizosaccharomyces pombe|chr
1|||Manual
Length = 644
Score = 24.2 bits (50), Expect = 9.0
Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Frame = -1
Query: 301 SPVRERCGPRLYENRWVACDGSSY-LNHNQCWASS 200
SP RE C + + AC+G+S+ L H ASS
Sbjct: 28 SPEREYCSDCPLQAKGSACNGNSHSLKHETNGASS 62
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,889,068
Number of Sequences: 5004
Number of extensions: 38483
Number of successful extensions: 114
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 114
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 160149590
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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