Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_O12
         (325 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyce...    71   6e-14
SPBC530.06c |||translation initiation factor eIF3 alpha subunit ...    25   3.7  
SPAC22E12.04 |ccs1|pccs, pccs|metallochaperone Ccs1 |Schizosacch...    25   3.7  
SPBC17A3.06 |||phosphoprotein phosphatase|Schizosaccharomyces po...    25   3.7  
SPBC3D6.12 |||U3 snoRNA associted protein Dip2 |Schizosaccharomy...    24   6.5  
SPBC557.03c |pim1|dcd1, ptr2|GDP/GTP exchange factor |Schizosacc...    24   6.5  
SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr 3||...    23   8.6  
SPBC14C8.02 |tim44||TIM23 translocase complex subunit Tim44|Schi...    23   8.6  
SPAC644.06c |cdr1|nim1|GIN4 family protein kinase Cdr1|Schizosac...    23   8.6  
SPBC947.05c |||ferric-chelate reductase |Schizosaccharomyces pom...    23   8.6  

>SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 259

 Score = 70.5 bits (165), Expect = 6e-14
 Identities = 30/46 (65%), Positives = 38/46 (82%)
 Frame = +1

Query: 187 LFEKRTKNFAIGQDIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKV 324
           LF  R ++F IGQDIQP RDLSRFV+WP+YIR+QR++ +L  RLKV
Sbjct: 26  LFVSRPRSFGIGQDIQPKRDLSRFVKWPEYIRLQRRRKILNLRLKV 71


>SPBC530.06c |||translation initiation factor eIF3 alpha subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1173

 Score = 24.6 bits (51), Expect = 3.7
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +3

Query: 171 EDCKPSIREENKELCY 218
           E CK  + + NKELCY
Sbjct: 947 EACKACLLQGNKELCY 962


>SPAC22E12.04 |ccs1|pccs, pccs|metallochaperone Ccs1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 297

 Score = 24.6 bits (51), Expect = 3.7
 Identities = 15/49 (30%), Positives = 21/49 (42%), Gaps = 1/49 (2%)
 Frame = +3

Query: 72  ELKSIQDGXXXXXXXDREKSSGRSTCGEES*A-QEDCKPSIREENKELC 215
           ELKS+ +G       D   S   S C +E  +     KPS   + K+ C
Sbjct: 215 ELKSVNEGSSCCSKKDSSPSEKPSCCSQEKKSCCSSKKPSCCSQEKKGC 263


>SPBC17A3.06 |||phosphoprotein phosphatase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 330

 Score = 24.6 bits (51), Expect = 3.7
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = -3

Query: 305 NTAF*RWMRIYFGHRTKRDRSLVGWMSWPIAKF 207
           N  F R +R+YF    + DRSL  +  W   ++
Sbjct: 171 NANFLRQLRVYFECNYQLDRSLRPYRQWLFRRY 203


>SPBC3D6.12 |||U3 snoRNA associted protein Dip2 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 922

 Score = 23.8 bits (49), Expect = 6.5
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = -2

Query: 180 YNLLGLNFLHHKW 142
           YN  GL++L H+W
Sbjct: 881 YNAAGLSYLRHEW 893


>SPBC557.03c |pim1|dcd1, ptr2|GDP/GTP exchange factor
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 539

 Score = 23.8 bits (49), Expect = 6.5
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = +2

Query: 20  SFGVRNRSRIYSWPLD 67
           SF + N+ R+Y+W L+
Sbjct: 291 SFAIDNKGRVYAWGLN 306


>SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1315

 Score = 23.4 bits (48), Expect = 8.6
 Identities = 8/31 (25%), Positives = 14/31 (45%)
 Frame = -2

Query: 171 LGLNFLHHKWSGRYFFPYXXXXXXXXXLEWI 79
           LGL +L  +W  +YF  +          +W+
Sbjct: 179 LGLAYLIFRWLPKYFIRFVGTREPLATADWL 209


>SPBC14C8.02 |tim44||TIM23 translocase complex subunit
           Tim44|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 427

 Score = 23.4 bits (48), Expect = 8.6
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +1

Query: 190 FEKRTKNFAIGQDIQPTRDLSRFV 261
           FE+R + FA    IQP  D+   V
Sbjct: 181 FERRNRMFASSARIQPNEDVQSVV 204


>SPAC644.06c |cdr1|nim1|GIN4 family protein kinase
           Cdr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 593

 Score = 23.4 bits (48), Expect = 8.6
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +3

Query: 270 EIYSHPASKGCVTASS 317
           E++SHP   GC + SS
Sbjct: 251 EVFSHPFLMGCTSLSS 266


>SPBC947.05c |||ferric-chelate reductase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 564

 Score = 23.4 bits (48), Expect = 8.6
 Identities = 9/23 (39%), Positives = 11/23 (47%)
 Frame = +3

Query: 210 LCYWPGHPANQRSIPFRAMAEIY 278
           L YW  HP    S PF    E++
Sbjct: 304 LSYWQVHPFTLASAPFDDFIELF 326


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,173,418
Number of Sequences: 5004
Number of extensions: 19094
Number of successful extensions: 56
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 56
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 87815546
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)