Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_O12
         (325 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    24   0.53 
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    24   0.53 
AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...    23   0.92 
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...    23   0.92 
DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    21   4.9  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    20   8.6  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    20   8.6  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             20   8.6  

>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 23.8 bits (49), Expect = 0.53
 Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
 Frame = +3

Query: 204 KELCYWPGHPANQR-SIPFRAMAEIYSHPASKGCVTASS 317
           ++ CY+P HP+ Q  S         +S  ASK  ++ SS
Sbjct: 385 EKTCYYPYHPSTQEDSEEHLTPKRFHSRAASKEDLSPSS 423


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 23.8 bits (49), Expect = 0.53
 Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
 Frame = +3

Query: 204 KELCYWPGHPANQR-SIPFRAMAEIYSHPASKGCVTASS 317
           ++ CY+P HP+ Q  S         +S  ASK  ++ SS
Sbjct: 385 EKTCYYPYHPSTQEDSEEHLTPKRFHSRAASKEDLSPSS 423


>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 23.0 bits (47), Expect = 0.92
 Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
 Frame = +3

Query: 174 DCKPSIREENKELCYWPGHPANQ-RSIPFRAM 266
           DC   I +E   L YW G+ AN  R  P +A+
Sbjct: 58  DCFVRIPKEQGFLSYWRGNLANVIRYFPTQAL 89


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 23.0 bits (47), Expect = 0.92
 Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
 Frame = +3

Query: 174 DCKPSIREENKELCYWPGHPANQ-RSIPFRAM 266
           DC   I +E   L YW G+ AN  R  P +A+
Sbjct: 58  DCFVRIPKEQGFLSYWRGNLANVIRYFPTQAL 89


>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 20.6 bits (41), Expect = 4.9
 Identities = 5/8 (62%), Positives = 8/8 (100%)
 Frame = -1

Query: 250 IDLWLAGC 227
           +D+W+AGC
Sbjct: 262 LDVWMAGC 269


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 19.8 bits (39), Expect = 8.6
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = -2

Query: 186 RVYNLLGLNFLHHKWSG 136
           R++NL+ +  L   WSG
Sbjct: 278 RIFNLICMMLLIGHWSG 294


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 19.8 bits (39), Expect = 8.6
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = -2

Query: 186 RVYNLLGLNFLHHKWSG 136
           R++NL+ +  L   WSG
Sbjct: 246 RIFNLICMMLLIGHWSG 262


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 19.8 bits (39), Expect = 8.6
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = +3

Query: 216  YWPGHPANQRSIPFRAMAEIYSHPASK 296
            Y P  PAN +    +A A+  S  A+K
Sbjct: 997  YTPPQPANAQQGQAQAQAKPQSQEANK 1023


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 78,140
Number of Sequences: 438
Number of extensions: 1401
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  7093251
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)