Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_O11
         (244 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132902-1|CAB81996.1|  246|Caenorhabditis elegans Hypothetical ...   107   1e-24
Z77133-7|CAB00865.2|  735|Caenorhabditis elegans Hypothetical pr...    27   1.8  
AL008868-4|CAO82021.1|  735|Caenorhabditis elegans Hypothetical ...    27   1.8  
Z82077-9|CAB04941.1|  259|Caenorhabditis elegans Hypothetical pr...    27   2.3  
AL032650-2|CAA21705.1|  259|Caenorhabditis elegans Hypothetical ...    27   2.3  
Z54216-9|CAN86906.1|  155|Caenorhabditis elegans Hypothetical pr...    26   3.1  
Z54216-8|CAA90948.1|  101|Caenorhabditis elegans Hypothetical pr...    26   3.1  
Z54216-7|CAI46586.1|  299|Caenorhabditis elegans Hypothetical pr...    26   3.1  
Z54216-6|CAB76416.2|  319|Caenorhabditis elegans Hypothetical pr...    26   3.1  
Z81477-4|CAB03925.2|  279|Caenorhabditis elegans Hypothetical pr...    26   4.1  
U40483-1|AAA99775.1|  322|Caenorhabditis elegans NEX1 annexin pr...    26   4.1  
U00064-7|AAB52702.1|  322|Caenorhabditis elegans Annexin family ...    26   4.1  
AC006804-1|AAF60755.1|  340|Caenorhabditis elegans Hypothetical ...    26   4.1  
AL034391-1|CAA22302.2|  333|Caenorhabditis elegans Hypothetical ...    25   5.4  
AF067942-9|AAG45572.1|  347|Caenorhabditis elegans Hypothetical ...    25   5.4  
Z35604-7|CAA84682.1|  304|Caenorhabditis elegans Hypothetical pr...    25   7.1  
Z29560-9|CAA82661.3|  148|Caenorhabditis elegans Hypothetical pr...    25   7.1  
U12965-5|AAA20612.2|  346|Caenorhabditis elegans Serpentine rece...    25   7.1  
Z82084-3|CAB04977.1|  780|Caenorhabditis elegans Hypothetical pr...    25   9.4  

>AL132902-1|CAB81996.1|  246|Caenorhabditis elegans Hypothetical
           protein Y71A12B.1 protein.
          Length = 246

 Score =  107 bits (257), Expect = 1e-24
 Identities = 47/65 (72%), Positives = 54/65 (83%)
 Frame = +2

Query: 32  MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVDADLLGDEWKGYVLRVAGGNDKQG 211
           M+LN +YPATG QK FEV +E KLR+F+EKRM  EV  D LGDEWKGYV+R+ GGNDKQG
Sbjct: 1   MRLNFAYPATGLQKSFEVDEEKKLRLFFEKRMSQEVAIDALGDEWKGYVVRIGGGNDKQG 60

Query: 212 FPMKQ 226
           FPMKQ
Sbjct: 61  FPMKQ 65


>Z77133-7|CAB00865.2|  735|Caenorhabditis elegans Hypothetical
           protein K03A11.1 protein.
          Length = 735

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = -3

Query: 173 NLSIRRLEDLHQLQRPYAFHRRY 105
           N+ +RRLE+L  ++RP   H R+
Sbjct: 227 NMVVRRLEELGAIERPLNLHVRF 249


>AL008868-4|CAO82021.1|  735|Caenorhabditis elegans Hypothetical
           protein K03A11.1 protein.
          Length = 735

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = -3

Query: 173 NLSIRRLEDLHQLQRPYAFHRRY 105
           N+ +RRLE+L  ++RP   H R+
Sbjct: 227 NMVVRRLEELGAIERPLNLHVRF 249


>Z82077-9|CAB04941.1|  259|Caenorhabditis elegans Hypothetical
           protein W09C5.1 protein.
          Length = 259

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = -3

Query: 131 RPYAFHRRYGACAHPPLQITSDIPLPGMKRSTS 33
           RP     +     HP LQ T  +P+ G+K++ S
Sbjct: 171 RPMGLRFKKAHVTHPELQTTFHLPIVGVKKNPS 203


>AL032650-2|CAA21705.1|  259|Caenorhabditis elegans Hypothetical
           protein W09C5.1 protein.
          Length = 259

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = -3

Query: 131 RPYAFHRRYGACAHPPLQITSDIPLPGMKRSTS 33
           RP     +     HP LQ T  +P+ G+K++ S
Sbjct: 171 RPMGLRFKKAHVTHPELQTTFHLPIVGVKKNPS 203


>Z54216-9|CAN86906.1|  155|Caenorhabditis elegans Hypothetical
           protein T24H10.7d protein.
          Length = 155

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
 Frame = +2

Query: 56  ATGC-QKLFEVVDEHKLRIFYEKRMGAEVDADLL 154
           AT C QK  + + E + ++ +EK  G  +DA+LL
Sbjct: 94  ATKCRQKKMDRIKELEEQVLHEKHRGQRLDAELL 127


>Z54216-8|CAA90948.1|  101|Caenorhabditis elegans Hypothetical
           protein T24H10.7c protein.
          Length = 101

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
 Frame = +2

Query: 56  ATGC-QKLFEVVDEHKLRIFYEKRMGAEVDADLL 154
           AT C QK  + + E + ++ +EK  G  +DA+LL
Sbjct: 40  ATKCRQKKMDRIKELEEQVLHEKHRGQRLDAELL 73


>Z54216-7|CAI46586.1|  299|Caenorhabditis elegans Hypothetical
           protein T24H10.7b protein.
          Length = 299

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
 Frame = +2

Query: 56  ATGC-QKLFEVVDEHKLRIFYEKRMGAEVDADLL 154
           AT C QK  + + E + ++ +EK  G  +DA+LL
Sbjct: 238 ATKCRQKKMDRIKELEEQVLHEKHRGQRLDAELL 271


>Z54216-6|CAB76416.2|  319|Caenorhabditis elegans Hypothetical
           protein T24H10.7a protein.
          Length = 319

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
 Frame = +2

Query: 56  ATGC-QKLFEVVDEHKLRIFYEKRMGAEVDADLL 154
           AT C QK  + + E + ++ +EK  G  +DA+LL
Sbjct: 258 ATKCRQKKMDRIKELEEQVLHEKHRGQRLDAELL 291


>Z81477-4|CAB03925.2|  279|Caenorhabditis elegans Hypothetical
           protein C27C7.5 protein.
          Length = 279

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 19/76 (25%), Positives = 26/76 (34%), Gaps = 1/76 (1%)
 Frame = +2

Query: 14  KGLIAVMKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVDADLLGDEWK-GYVLRVA 190
           + L   MK+N S   T C          K+R  +E    +  +    GD WK  Y  +V 
Sbjct: 81  ENLKVAMKINNSTADTTCPTSISGSFPSKMRSMWETFTNSNYNITFTGDLWKFSYQDKVT 140

Query: 191 GGNDKQGFPMKQASPD 238
                   P     PD
Sbjct: 141 QAGSNYALPYTIIFPD 156


>U40483-1|AAA99775.1|  322|Caenorhabditis elegans NEX1 annexin
           protein.
          Length = 322

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +2

Query: 101 LRIFYEKRMGAEVDADLLGD 160
           +R+ YEK  G  ++AD+ GD
Sbjct: 122 IRVTYEKEYGKALEADIAGD 141


>U00064-7|AAB52702.1|  322|Caenorhabditis elegans Annexin family
           protein 1 protein.
          Length = 322

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +2

Query: 101 LRIFYEKRMGAEVDADLLGD 160
           +R+ YEK  G  ++AD+ GD
Sbjct: 122 IRVTYEKEYGKALEADIAGD 141


>AC006804-1|AAF60755.1|  340|Caenorhabditis elegans Hypothetical
           protein Y53G8B.2 protein.
          Length = 340

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = +2

Query: 65  CQKLFEVVDEHKLRIFYEK 121
           CQKL E+ DEHK +   EK
Sbjct: 315 CQKLTELFDEHKEKYGVEK 333


>AL034391-1|CAA22302.2|  333|Caenorhabditis elegans Hypothetical
           protein Y40H4A.2 protein.
          Length = 333

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 14/31 (45%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
 Frame = -3

Query: 185 HGEHNLSIRRLEDLHQLQRPYAFHRRYG-AC 96
           HG  +  I++LED+ ++QRP  F   YG AC
Sbjct: 197 HGGISPHIQKLEDIDKIQRP-TFIPSYGLAC 226


>AF067942-9|AAG45572.1|  347|Caenorhabditis elegans Hypothetical
           protein ZK6.2 protein.
          Length = 347

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -2

Query: 225 CFIGKPCLSLPPATRR 178
           CF+G+ C   PP TR+
Sbjct: 45  CFLGENCFERPPFTRK 60


>Z35604-7|CAA84682.1|  304|Caenorhabditis elegans Hypothetical
           protein ZK1058.9 protein.
          Length = 304

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 10/24 (41%), Positives = 17/24 (70%), Gaps = 1/24 (4%)
 Frame = -3

Query: 134 QRPYAFHRRYGAC-AHPPLQITSD 66
           +RPY+F R YG   ++ P Q+T++
Sbjct: 201 RRPYSFDRNYGLTPSYTPPQLTAE 224


>Z29560-9|CAA82661.3|  148|Caenorhabditis elegans Hypothetical
           protein K03H1.9 protein.
          Length = 148

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 11/28 (39%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
 Frame = -3

Query: 188 QHGEHNLSIRRLE-DLHQLQRPYAFHRR 108
           QH  ++L + RL   LH+L+ P+  HR+
Sbjct: 9   QHHRYHLLLLRLHYRLHRLRHPFHHHRK 36


>U12965-5|AAA20612.2|  346|Caenorhabditis elegans Serpentine
           receptor, class b (beta)protein 11 protein.
          Length = 346

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = +3

Query: 159 TNGKVMFSVLPAVTTSRA 212
           T+G V FSV+PAV   +A
Sbjct: 168 TDGNVSFSVIPAVAAQKA 185


>Z82084-3|CAB04977.1|  780|Caenorhabditis elegans Hypothetical
           protein ZK1053.3 protein.
          Length = 780

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = -1

Query: 88  HHFK*LLTSRCRV*NVQLHDCDQSLR 11
           H+ K     +C +  V++ +CD SLR
Sbjct: 433 HNLKDFRRHKCEICEVEVQECDLSLR 458


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,429,750
Number of Sequences: 27780
Number of extensions: 95163
Number of successful extensions: 232
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 228
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 232
length of database: 12,740,198
effective HSP length: 60
effective length of database: 11,073,398
effective search space used: 221467960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)