Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_O09
         (327 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6C3.05 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    25   2.9  
SPBC887.02 |||ClC chloride channel|Schizosaccharomyces pombe|chr...    25   3.8  
SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces pom...    24   5.1  
SPBC725.08 |||transcription factor |Schizosaccharomyces pombe|ch...    23   8.8  

>SPAC6C3.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 269

 Score = 25.0 bits (52), Expect = 2.9
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -3

Query: 88  NYNHLIIFLSTLRIYNGLSNIIYGRLPLV 2
           +YN L I+ STL  Y  + N+I   L ++
Sbjct: 127 SYNFLTIYFSTLLSYEKVENLIKKSLTVI 155


>SPBC887.02 |||ClC chloride channel|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 667

 Score = 24.6 bits (51), Expect = 3.8
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +3

Query: 234 DAVAHVFIIHICGCMGDV 287
           D +  +FI  +CGC+G V
Sbjct: 291 DTLPFIFISILCGCLGSV 308


>SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1375

 Score = 24.2 bits (50), Expect = 5.1
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -2

Query: 77  LNYFLKYTKNLQRTFKHYLRKTSPR 3
           L + L YT++  RT +H  R  SP+
Sbjct: 389 LRFELLYTESHSRTLRHEKRHVSPK 413


>SPBC725.08 |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 609

 Score = 23.4 bits (48), Expect = 8.8
 Identities = 9/30 (30%), Positives = 18/30 (60%)
 Frame = -3

Query: 109 DMKQNTINYNHLIIFLSTLRIYNGLSNIIY 20
           D  +NT+  +H++  +S  +I+N L  I +
Sbjct: 218 DAMENTLLVSHVLPNISVAQIHNALDGISF 247


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,211,053
Number of Sequences: 5004
Number of extensions: 20692
Number of successful extensions: 56
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 56
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 89857768
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)