Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_O09
         (327 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_01_0530 - 4567481-4569043                                           27   2.6  
05_01_0062 + 440239-440325,441107-441183,441416-441643,441953-44...    27   2.6  
07_01_0444 + 3357048-3357425,3357841-3357969,3358165-3358284,335...    27   3.5  
10_02_0082 + 5063299-5064885                                           26   6.1  
08_01_0114 - 900530-901191,901269-901338,901536-901640,901721-90...    26   6.1  

>05_01_0530 - 4567481-4569043
          Length = 520

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +1

Query: 157 ATKLESFVYACVKTDACVYKDACSDW 234
           A  LE+F+ A  +   CV  D+CS W
Sbjct: 106 AAPLEAFLRALPRRPDCVVADSCSPW 131


>05_01_0062 +
           440239-440325,441107-441183,441416-441643,441953-442176,
           442250-442398,443102-443279,443348-443428,443523-443669,
           443759-444483
          Length = 631

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 14/32 (43%), Positives = 16/32 (50%)
 Frame = -3

Query: 139 NDIK*YQLW*DMKQNTINYNHLIIFLSTLRIY 44
           N IK Y  W D K N IN+   +    TLR Y
Sbjct: 101 NIIKFYNSWLDKKNNNINFITEVFTSGTLRQY 132


>07_01_0444 +
           3357048-3357425,3357841-3357969,3358165-3358284,
           3358661-3358753,3358935-3359014,3359180-3359293,
           3359530-3359603,3359757-3359833,3360558-3360641,
           3360732-3360824,3360901-3361008,3361130-3361204,
           3361507-3361911
          Length = 609

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 10/19 (52%), Positives = 15/19 (78%)
 Frame = +1

Query: 73  LSDYNLLYFVSYLTIADIT 129
           LS+YN+LYF  +L I D++
Sbjct: 374 LSEYNILYFEGHLYIIDVS 392


>10_02_0082 + 5063299-5064885
          Length = 528

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +1

Query: 166 LESFVYACVKTDACVYKDACSDW 234
           LE++V A  +   CV  DAC+ W
Sbjct: 110 LEAYVRALPRRPDCVVADACNPW 132


>08_01_0114 - 900530-901191,901269-901338,901536-901640,901721-901831,
            901912-902016,902245-902391,903273-903354,903445-903786,
            903873-904177,904259-904435,904799-904852,905171-905254,
            905855-905968,906048-906321,907552-907926,908003-908267,
            908352-908538,908615-909052,909895-909966,910037-910630,
            911471-911623,911700-911828,912326-912657,912705-912840,
            913046-913491,913580-915087,915169-915431,915622-915738,
            915844-916014,916743-916845,916930-916988,918360-918461,
            918560-918649,918727-918877,919745-919830,919926-920102,
            920915-920978,921859-922008,923132-923211,923311-923376,
            924540-924747,925502-925575,925761-925848,926140-926312,
            926541-926609,926698-926741,927074-927167,927290-927366,
            927475-927552,927992-928085
          Length = 3314

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 14/51 (27%), Positives = 17/51 (33%)
 Frame = +2

Query: 89   YCXXXXXXXXXXXXXXXQCRVNKQQNWKVLCMHVLKLMRVCIRMHVVIGCG 241
            YC                C  N  QN     + VL L  V +R+H    CG
Sbjct: 1078 YCAQGPASNSLCKTKHSNCSSNSSQNSMNASLTVLDLSLVSVRVHFHESCG 1128


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,114,518
Number of Sequences: 37544
Number of extensions: 113404
Number of successful extensions: 270
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 266
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 270
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 435246480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)