Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_O09
         (327 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z29117-11|CAA82382.1|  307|Caenorhabditis elegans Hypothetical p...    28   1.8  
AC024207-2|AAL77193.1|  425|Caenorhabditis elegans Hypothetical ...    27   3.2  
Z80215-14|CAI79138.1|  662|Caenorhabditis elegans Hypothetical p...    27   4.2  
Z80215-13|CAI79137.1|  640|Caenorhabditis elegans Hypothetical p...    27   4.2  
Z80215-12|CAB02277.1|  652|Caenorhabditis elegans Hypothetical p...    27   4.2  
U88314-1|AAF99885.1|  342|Caenorhabditis elegans Hypothetical pr...    26   7.4  

>Z29117-11|CAA82382.1|  307|Caenorhabditis elegans Hypothetical
           protein C48B4.11 protein.
          Length = 307

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 7/20 (35%), Positives = 17/20 (85%)
 Frame = +1

Query: 241 LHMCLSYIYVDAWVMLLHFI 300
           L M ++Y++ ++W+M++HF+
Sbjct: 195 LIMTVTYVFNNSWIMMIHFV 214


>AC024207-2|AAL77193.1|  425|Caenorhabditis elegans Hypothetical
           protein Y74E4A.1a protein.
          Length = 425

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +1

Query: 196 TDACVYKDACSDWMRLHMCLS 258
           TD    KDA SDW+++H  L+
Sbjct: 385 TDGTSSKDATSDWLQVHSALN 405


>Z80215-14|CAI79138.1|  662|Caenorhabditis elegans Hypothetical
           protein C36B1.12c protein.
          Length = 662

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = +2

Query: 176 LCMHVLKLMRVCIRMHVVIGCGCTCVYHTYM 268
           LCMHVLK +R+     + I   C  VY  +M
Sbjct: 406 LCMHVLKCLRLPSLKWISILMLCMFVYDAFM 436


>Z80215-13|CAI79137.1|  640|Caenorhabditis elegans Hypothetical
           protein C36B1.12b protein.
          Length = 640

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = +2

Query: 176 LCMHVLKLMRVCIRMHVVIGCGCTCVYHTYM 268
           LCMHVLK +R+     + I   C  VY  +M
Sbjct: 406 LCMHVLKCLRLPSLKWISILMLCMFVYDAFM 436


>Z80215-12|CAB02277.1|  652|Caenorhabditis elegans Hypothetical
           protein C36B1.12a protein.
          Length = 652

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = +2

Query: 176 LCMHVLKLMRVCIRMHVVIGCGCTCVYHTYM 268
           LCMHVLK +R+     + I   C  VY  +M
Sbjct: 406 LCMHVLKCLRLPSLKWISILMLCMFVYDAFM 436


>U88314-1|AAF99885.1|  342|Caenorhabditis elegans Hypothetical
           protein C46H11.6 protein.
          Length = 342

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = -3

Query: 91  INYNHLIIFLSTLRIYNGL 35
           IN N ++ FLST   YNGL
Sbjct: 51  INENSMVSFLSTNSFYNGL 69


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,574,830
Number of Sequences: 27780
Number of extensions: 114715
Number of successful extensions: 310
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 308
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 310
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 398409266
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)