Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_O08
(299 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces ... 28 0.34
SPAC1039.07c |||4-aminobutyrate aminotransferase |Schizosaccharo... 25 2.4
SPBC691.03c |apl3||AP-2 adaptor complex subunit Alp3 |Schizosacc... 25 3.1
SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase Snf22... 24 4.2
SPBC1A4.08c |cct3||chaperonin-containing T-complex gamma subunit... 24 4.2
SPCC553.02 |||glutamine-dependent NAD|Schizosaccharomyces pombe|... 24 5.5
SPAC1F3.03 |||Lgl family protein|Schizosaccharomyces pombe|chr 1... 24 5.5
SPBC3B8.04c |||membrane transporter|Schizosaccharomyces pombe|ch... 23 7.3
SPAC29A4.05 |cam2||myosin I light chain Cam2|Schizosaccharomyces... 23 7.3
SPAC3H5.11 |||NAD/NADH kinase |Schizosaccharomyces pombe|chr 1||... 23 7.3
SPAC694.03 |||conserved fungal protein|Schizosaccharomyces pombe... 23 9.6
SPAC926.04c |hsp90|swo1|heat shock protein Hsp90|Schizosaccharom... 23 9.6
SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual 23 9.6
SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||... 23 9.6
>SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 2344
Score = 27.9 bits (59), Expect = 0.34
Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Frame = +1
Query: 55 VINRPGFAKLFFDAAS-EEREHAMKLIDYLLMRGELISDVSDLITVKNFEPVYFNS 219
V+ + G LF+ S REH +KLI +L + D ++ F P Y N+
Sbjct: 308 VLEKTGRTSLFYLPCSIYGREHEIKLIRKILRNSPRAINHQDKKDLETFNPYYLNA 363
>SPAC1039.07c |||4-aminobutyrate aminotransferase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 448
Score = 25.0 bits (52), Expect = 2.4
Identities = 12/38 (31%), Positives = 23/38 (60%)
Frame = +1
Query: 154 ELISDVSDLITVKNFEPVYFNSGADALEAALNMESFVT 267
+L +++SDL+ + ++ ++G +A EAAL M T
Sbjct: 96 QLATELSDLLPDGLDKTLFLSTGGEANEAALRMAKVYT 133
>SPBC691.03c |apl3||AP-2 adaptor complex subunit Alp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 878
Score = 24.6 bits (51), Expect = 3.1
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +1
Query: 175 DLITVKNFEPVYFNSGADALEAALNMESFV 264
DLI + FEP+ G D L +L + +FV
Sbjct: 176 DLINPEWFEPIVMILGDDDLNVSLAVSNFV 205
>SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase
Snf22|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1680
Score = 24.2 bits (50), Expect = 4.2
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = -1
Query: 113 SLSSLAASKNSFANPGRLITSREKWAPIARYCTD 12
SLS+ + ++S A GR T K + RYC +
Sbjct: 1491 SLSTPLSQESSLARSGRKNTPSYKQKALRRYCME 1524
>SPBC1A4.08c |cct3||chaperonin-containing T-complex gamma subunit
Cct3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 528
Score = 24.2 bits (50), Expect = 4.2
Identities = 15/58 (25%), Positives = 28/58 (48%)
Frame = +1
Query: 94 AASEEREHAMKLIDYLLMRGELISDVSDLITVKNFEPVYFNSGADALEAALNMESFVT 267
A +++ E +++ GE+++ S L+ K V S ALE AL++ +T
Sbjct: 82 ARTQDEEVGDGTTSVIILAGEILAAASPLLDRKIHPVVMIRSFKQALEDALSIIDEIT 139
>SPCC553.02 |||glutamine-dependent NAD|Schizosaccharomyces pombe|chr
3|||Manual
Length = 700
Score = 23.8 bits (49), Expect = 5.5
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = -3
Query: 264 YERFHVQSSLQSIGPAIEVYR 202
YER HV SL S ++YR
Sbjct: 297 YERIHVNFSLSSYQQDYDIYR 317
>SPAC1F3.03 |||Lgl family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1004
Score = 23.8 bits (49), Expect = 5.5
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = -3
Query: 243 SSLQSIGPAIEVYRFEVFDGDKIADVRNKLS 151
SSLQS+G + F V+ GD V NK++
Sbjct: 720 SSLQSVGYPLPQEVFLVYIGDSGISVFNKIN 750
>SPBC3B8.04c |||membrane transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 867
Score = 23.4 bits (48), Expect = 7.3
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = +3
Query: 105 REGACDEADRLLAHEGRA 158
++GA DE RLL HE R+
Sbjct: 40 QQGAPDEETRLLEHERRS 57
>SPAC29A4.05 |cam2||myosin I light chain Cam2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 143
Score = 23.4 bits (48), Expect = 7.3
Identities = 17/71 (23%), Positives = 33/71 (46%), Gaps = 2/71 (2%)
Frame = +1
Query: 19 QYLAMGAHFSRDVINRPGFAKLF--FDAASEEREHAMKLIDYLLMRGELISDVSDLITVK 192
++++ ++ R+ + + K F FD + K DY+ GE +SD + V+
Sbjct: 62 KFMSFVSNKLRETESEEEYIKAFRVFDKDNSGYIETAKFADYMKTLGEKLSDNEVQLMVQ 121
Query: 193 NFEPVYFNSGA 225
+P NSG+
Sbjct: 122 EADPT--NSGS 130
>SPAC3H5.11 |||NAD/NADH kinase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 393
Score = 23.4 bits (48), Expect = 7.3
Identities = 13/42 (30%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Frame = -1
Query: 272 LFVTNDSMF-RAASKASAPLLKYTGSKFLTVIRSLTSEISSP 150
L V N+ + R + A + ++ Y SK+LT +++ IS+P
Sbjct: 243 LVVLNEVVIDRGPNTAMSDIMLYVDSKYLTTVKADGLCISTP 284
>SPAC694.03 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 249
Score = 23.0 bits (47), Expect = 9.6
Identities = 9/16 (56%), Positives = 10/16 (62%)
Frame = -3
Query: 183 DKIADVRNKLSPHEQV 136
DK + NKL P EQV
Sbjct: 110 DKCRSISNKLGPREQV 125
>SPAC926.04c |hsp90|swo1|heat shock protein
Hsp90|Schizosaccharomyces pombe|chr 1|||Manual
Length = 704
Score = 23.0 bits (47), Expect = 9.6
Identities = 13/39 (33%), Positives = 18/39 (46%)
Frame = +1
Query: 25 LAMGAHFSRDVINRPGFAKLFFDAASEEREHAMKLIDYL 141
L +G H D NRP AKL + + + L DY+
Sbjct: 420 LKLGIH--EDAANRPALAKLLRYNSLNSPDDLISLEDYI 456
>SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1496
Score = 23.0 bits (47), Expect = 9.6
Identities = 8/17 (47%), Positives = 13/17 (76%)
Frame = +1
Query: 157 LISDVSDLITVKNFEPV 207
++S +S L+ +KN EPV
Sbjct: 88 VVSHISSLLNIKNREPV 104
>SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1096
Score = 23.0 bits (47), Expect = 9.6
Identities = 10/28 (35%), Positives = 15/28 (53%)
Frame = -3
Query: 228 IGPAIEVYRFEVFDGDKIADVRNKLSPH 145
+G +EV F F+G A +R +PH
Sbjct: 542 VGDPLEVTLFTQFNGTFCATIRASNTPH 569
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,185,778
Number of Sequences: 5004
Number of extensions: 20044
Number of successful extensions: 80
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 80
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 73700136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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