Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_O08
         (299 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    21   2.5  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    21   3.3  
DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    20   5.7  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    20   7.6  

>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.4 bits (43), Expect = 2.5
 Identities = 12/44 (27%), Positives = 20/44 (45%)
 Frame = -3

Query: 279 SDALCYERFHVQSSLQSIGPAIEVYRFEVFDGDKIADVRNKLSP 148
           S  LC   + +     + G   E +R  +   D +A +R KL+P
Sbjct: 591 SSMLCIPGYMIYIWFTTSGTISEKFRKLIRIEDNVATLRMKLNP 634


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.0 bits (42), Expect = 3.3
 Identities = 12/44 (27%), Positives = 20/44 (45%)
 Frame = -3

Query: 279 SDALCYERFHVQSSLQSIGPAIEVYRFEVFDGDKIADVRNKLSP 148
           S  LC   + +     + G   E +R  +   D +A +R KL+P
Sbjct: 538 SSMLCIPGYMIYIWFTTSGTISEKFRKLIRIEDDVATLRMKLNP 581


>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 20.2 bits (40), Expect = 5.7
 Identities = 7/8 (87%), Positives = 8/8 (100%)
 Frame = +3

Query: 177 SYHRQKLR 200
           SYH+QKLR
Sbjct: 138 SYHKQKLR 145


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 19.8 bits (39), Expect = 7.6
 Identities = 11/43 (25%), Positives = 20/43 (46%)
 Frame = -3

Query: 219 AIEVYRFEVFDGDKIADVRNKLSPHEQVVDQLHRMLPLFASRV 91
           A+  YRF+VF  + ++ +  K S +  +       +P   S V
Sbjct: 384 AVTTYRFQVFAENGVSALAGK-SEYVDITVTTDASVPSLVSNV 425


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 80,808
Number of Sequences: 438
Number of extensions: 1635
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 49
effective length of database: 124,881
effective search space used:  6244050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)