Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_O07
         (341 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC543.05c |||inorganic anion exchanger |Schizosaccharomyces po...    26   1.8  
SPAC4F8.15 |itr1|SPAC7D4.01|myo-inositol transporter Itr1|Schizo...    25   4.3  
SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit Rev3|Sch...    24   5.6  
SPAC13A11.06 ||SPAC3H8.01|pyruvate decarboxylase |Schizosaccharo...    24   5.6  
SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces p...    23   9.8  
SPAC17C9.01c |nuc2|apc3, SPAC1851.01|anaphase-promoting complex ...    23   9.8  

>SPBC543.05c |||inorganic anion exchanger |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 517

 Score = 25.8 bits (54), Expect = 1.8
 Identities = 17/76 (22%), Positives = 34/76 (44%)
 Frame = -2

Query: 337 GADVFKTLRDKIPKHSF*VI*YFLKYSVPCC*TIKFSSIYTHIHRQRDLPHTANNNNGRN 158
           G+++   ++ ++P +    I       +P C  I FS++   +    D+    NN+ G N
Sbjct: 13  GSEIVNDVKKRLPYYKSDWIDACHYRVLPACLNIYFSNLLPELAFALDMFAKTNNSFGVN 72

Query: 157 SSPILNYFTSVYFVIL 110
              + +   SV F +L
Sbjct: 73  EVLLASVLGSVVFALL 88


>SPAC4F8.15 |itr1|SPAC7D4.01|myo-inositol transporter
           Itr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 575

 Score = 24.6 bits (51), Expect = 4.3
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = +3

Query: 162 RPLLLLAVWGRSLCLCICV*IEENFIVQQHGTEY 263
           R LLLL VWG    L +C  +  +F+ +     Y
Sbjct: 401 RILLLLTVWGMIAALIVCA-VAFHFLPKDENGNY 433


>SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit
            Rev3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1480

 Score = 24.2 bits (50), Expect = 5.6
 Identities = 14/39 (35%), Positives = 17/39 (43%)
 Frame = -2

Query: 181  ANNNNGRNSSPILNYFTSVYFVIL*IILLKQHAFKLSSV 65
            ANN   R  SPI   F  +YF    +   +   FK  SV
Sbjct: 1143 ANNITSRFPSPIRLKFEKIYFPCFLLAKKRYVGFKFESV 1181


>SPAC13A11.06 ||SPAC3H8.01|pyruvate decarboxylase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 571

 Score = 24.2 bits (50), Expect = 5.6
 Identities = 11/40 (27%), Positives = 20/40 (50%)
 Frame = -1

Query: 122 FCNFIDNFTKTTCFQIVLSLIKEYAKAIKDHTATCKKNPR 3
           F  F+D F K + + I++    + A+ I +  + C K  R
Sbjct: 125 FRTFMDMFKKVSAYSIMIDNGNDAAEKIDEALSICYKKAR 164


>SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1098

 Score = 23.4 bits (48), Expect = 9.8
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -3

Query: 336 ELMCSKHFATRFQSI 292
           +L+CS HF+  F SI
Sbjct: 134 DLLCSHHFSVEFTSI 148


>SPAC17C9.01c |nuc2|apc3, SPAC1851.01|anaphase-promoting complex
           subunit Apc3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 665

 Score = 23.4 bits (48), Expect = 9.8
 Identities = 9/31 (29%), Positives = 15/31 (48%)
 Frame = -1

Query: 107 DNFTKTTCFQIVLSLIKEYAKAIKDHTATCK 15
           +N    TC  ++    K+Y KA+  +   CK
Sbjct: 531 NNSVLITCIGMIYERCKDYKKALDFYDRACK 561


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,320,211
Number of Sequences: 5004
Number of extensions: 23590
Number of successful extensions: 47
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 47
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 100068878
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)