Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_O07
         (341 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0772 - 6455042-6458107                                           27   5.1  
08_02_0723 - 20422219-20423796                                         27   5.1  
01_05_0319 - 20871781-20871909,20872001-20872053,20873271-20873598     26   6.7  

>11_01_0772 - 6455042-6458107
          Length = 1021

 Score = 26.6 bits (56), Expect = 5.1
 Identities = 18/65 (27%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
 Frame = +2

Query: 119  KINTSKII*NRTRVTSVIIVGCMGQVSL--PMYMCINRRKFYSSATRYRIF*KVLYYLET 292
            K+N  K++   T +  +II GC  + +L  P++    RR  Y + +R  +       LE 
Sbjct: 846  KLNIEKLVPTSTMLQKLIIRGCTSESTLECPVFQDHGRRLKYLALSRCHLGHDAFERLEK 905

Query: 293  MLWNL 307
             + NL
Sbjct: 906  CVPNL 910


>08_02_0723 - 20422219-20423796
          Length = 525

 Score = 26.6 bits (56), Expect = 5.1
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = -2

Query: 241 TIKFSSIYTHIHRQRDLPHTANNNNGRN 158
           T     ++ H+H Q+    TANNN  R+
Sbjct: 492 TAPMVGVFAHLHAQKMAARTANNNADRS 519


>01_05_0319 - 20871781-20871909,20872001-20872053,20873271-20873598
          Length = 169

 Score = 26.2 bits (55), Expect = 6.7
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = -2

Query: 178 NNNNGRNSSPILNYFTSVYFVIL*IILLKQHAFKL 74
           NNN G ++SP      SVY ++L ++LL    F L
Sbjct: 37  NNNGGNSASPSSGGPFSVYNLLLLLLLLALFLFPL 71


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,629,443
Number of Sequences: 37544
Number of extensions: 121387
Number of successful extensions: 224
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 222
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 224
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 482105440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)