Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_O06
         (330 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F3.04c |||DUF367 family protein|Schizosaccharomyces pombe|c...    26   1.3  
SPAC9G1.10c |||inositol polyphosphate phosphatase |Schizosacchar...    26   1.3  
SPBC15D4.03 |slm9||hira protein Slm9|Schizosaccharomyces pombe|c...    25   3.0  
SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase ki...    24   5.2  
SPBC17D11.08 |||WD repeat protein, human WDR68 family|Schizosacc...    24   5.2  
SPCC553.09c |spb70|pol12|DNA polymerase alpha B-subunit|Schizosa...    24   6.8  

>SPAC1F3.04c |||DUF367 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 288

 Score = 26.2 bits (55), Expect = 1.3
 Identities = 10/30 (33%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
 Frame = +2

Query: 221 YYVGFQN-SEVMINRDNWGHTYCDVIGEIL 307
           Y VG+ N + ++++   WGH++ +V  E+L
Sbjct: 142 YIVGYPNEARLLMDNFKWGHSFFEVNEELL 171


>SPAC9G1.10c |||inositol polyphosphate phosphatase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1191

 Score = 26.2 bits (55), Expect = 1.3
 Identities = 12/20 (60%), Positives = 15/20 (75%)
 Frame = -2

Query: 62  TAGSPTICSADVSVSPLMPR 3
           T  SPTI ++ VSVSPL+ R
Sbjct: 123 TPSSPTISNSFVSVSPLLKR 142


>SPBC15D4.03 |slm9||hira protein Slm9|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 807

 Score = 25.0 bits (52), Expect = 3.0
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = +1

Query: 205 NMISVLLCWFSELRGND 255
           N +S+L C FS L GND
Sbjct: 476 NQLSLLKCTFSNLDGND 492


>SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase kinase
            Win1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1436

 Score = 24.2 bits (50), Expect = 5.2
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = -3

Query: 295  YNVAIRMPPVIPINHYLGVLKTNIIE 218
            Y++A   PP+IP +  L  L  N ++
Sbjct: 1359 YHIAAHNPPIIPADDQLSPLGQNFLK 1384


>SPBC17D11.08 |||WD repeat protein, human WDR68
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 435

 Score = 24.2 bits (50), Expect = 5.2
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = -1

Query: 171 F*ARFEHSNLFKVKLSAHLDTHRRAPR*DFD 79
           F A  +   L +  LS H+ TH  AP   FD
Sbjct: 143 FEAGIDSPLLCQASLSTHVKTHNNAPLTSFD 173


>SPCC553.09c |spb70|pol12|DNA polymerase alpha
           B-subunit|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 574

 Score = 23.8 bits (49), Expect = 6.8
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -2

Query: 197 SMHEIFKQHFEPALSTLIC 141
           S+ E+FK+   P LS L C
Sbjct: 365 SLEELFKERVTPILSQLTC 383


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,242,994
Number of Sequences: 5004
Number of extensions: 22151
Number of successful extensions: 44
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 44
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 91899990
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)