Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_O06
         (330 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_02_0101 - 8306468-8307099,8307227-8307404,8307990-8308259           31   0.17 
12_02_0402 - 18625023-18625808                                         27   2.7  
01_05_0475 - 22571571-22572466,22572626-22572947                       27   2.7  
04_04_1572 - 34527730-34527859,34528077-34528136,34528253-345283...    26   6.2  

>11_02_0101 - 8306468-8307099,8307227-8307404,8307990-8308259
          Length = 359

 Score = 31.5 bits (68), Expect = 0.17
 Identities = 14/31 (45%), Positives = 21/31 (67%)
 Frame = -2

Query: 95  RDRILILNRRLTAGSPTICSADVSVSPLMPR 3
           R+R ++L R +TAG PT+   +V  S +MPR
Sbjct: 15  RNRKVVLRRYVTAGYPTVDDMEVVSSTMMPR 45


>12_02_0402 - 18625023-18625808
          Length = 261

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = +2

Query: 263 DNWGHTYCDVIGEIL 307
           D WGH + D+ GEIL
Sbjct: 6   DRWGHVHRDIFGEIL 20


>01_05_0475 - 22571571-22572466,22572626-22572947
          Length = 405

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 14/51 (27%), Positives = 24/51 (47%)
 Frame = +1

Query: 28  TSAEHIVGEPAVKRRFNIKILSRCSSVSVEVGRQFYFEQIRVLKAGSKCCL 180
           T  EH++ E  VKR+F+  I      +   +G     EQ  ++ +  KC +
Sbjct: 122 TLVEHVLNEEMVKRKFSCIICLNSDGLRNLLGDGSPIEQNNLIYSNGKCLI 172


>04_04_1572 -
           34527730-34527859,34528077-34528136,34528253-34528375,
           34528506-34528960,34529343-34529876,34530638-34531501
          Length = 721

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 8/29 (27%), Positives = 17/29 (58%)
 Frame = +2

Query: 239 NSEVMINRDNWGHTYCDVIGEILGSSQDE 325
           N  V+++ + W +T+   +G  + S +DE
Sbjct: 560 NRTVIVDNNTWNNTHIATVGRAMSSYEDE 588


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,162,329
Number of Sequences: 37544
Number of extensions: 147576
Number of successful extensions: 313
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 309
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 313
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 447336660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)