Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_O06
         (330 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z66500-13|CAA91312.1| 1780|Caenorhabditis elegans Hypothetical p...    29   0.79 
Z48334-10|CAA88315.1| 1780|Caenorhabditis elegans Hypothetical p...    29   0.79 
U50068-5|AAB37734.1|  722|Caenorhabditis elegans Temporarily ass...    28   1.4  
Z83239-8|CAH60787.1|  311|Caenorhabditis elegans Hypothetical pr...    26   5.5  
Z73906-6|CAA98113.1|  824|Caenorhabditis elegans Hypothetical pr...    26   7.3  
Z54342-1|CAA91143.1|  505|Caenorhabditis elegans Hypothetical pr...    26   7.3  
Z69636-2|CAA93463.3|  247|Caenorhabditis elegans Hypothetical pr...    25   9.7  

>Z66500-13|CAA91312.1| 1780|Caenorhabditis elegans Hypothetical
           protein F10B5.7 protein.
          Length = 1780

 Score = 29.1 bits (62), Expect = 0.79
 Identities = 15/47 (31%), Positives = 23/47 (48%)
 Frame = -2

Query: 152 TLICSK*NCRPTSTLTEEHRDRILILNRRLTAGSPTICSADVSVSPL 12
           TL   K  C P +TLT  H +++L+   R+   S +    DV   P+
Sbjct: 43  TLPNRKTECTPVNTLTIGHSNKMLLTTFRMDRNSKSKSEVDVQEQPV 89


>Z48334-10|CAA88315.1| 1780|Caenorhabditis elegans Hypothetical
           protein F10B5.7 protein.
          Length = 1780

 Score = 29.1 bits (62), Expect = 0.79
 Identities = 15/47 (31%), Positives = 23/47 (48%)
 Frame = -2

Query: 152 TLICSK*NCRPTSTLTEEHRDRILILNRRLTAGSPTICSADVSVSPL 12
           TL   K  C P +TLT  H +++L+   R+   S +    DV   P+
Sbjct: 43  TLPNRKTECTPVNTLTIGHSNKMLLTTFRMDRNSKSKSEVDVQEQPV 89


>U50068-5|AAB37734.1|  722|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 292 protein.
          Length = 722

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = +1

Query: 10  ISGDTDTSAEHIVGEPAVKRRFNIKILSRCSSVSVEVGRQFYFE 141
           I  D      H+  EP V  +   + + R  SV+VE+G+ F F+
Sbjct: 2   IQNDYSIYQYHVEFEPTVDSKATRENMLRQPSVTVEIGKHFVFD 45


>Z83239-8|CAH60787.1|  311|Caenorhabditis elegans Hypothetical
           protein T09F5.16 protein.
          Length = 311

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = -2

Query: 227 HNRTEIIFYYSMHEIFKQHFEPALSTLICSK*N 129
           H   E+I  Y   +I    F P +S L+C+K N
Sbjct: 236 HELNEVILKYQYLDICHVSFFPQISYLLCNKKN 268


>Z73906-6|CAA98113.1|  824|Caenorhabditis elegans Hypothetical
           protein D2030.6 protein.
          Length = 824

 Score = 25.8 bits (54), Expect = 7.3
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = +1

Query: 40  HIVGEPAVKRRFNIKILSRCSSVSVEVGRQFYFE 141
           H+  EP V  + N + + R ++V+ E+G  F F+
Sbjct: 72  HVEFEPTVDSKANREKMLRDNNVTDEIGHHFVFD 105


>Z54342-1|CAA91143.1|  505|Caenorhabditis elegans Hypothetical
           protein C08H9.1 protein.
          Length = 505

 Score = 25.8 bits (54), Expect = 7.3
 Identities = 14/29 (48%), Positives = 17/29 (58%)
 Frame = +2

Query: 119 WADNFTLNKLECSKRAQNAA*IFRAWNNR 205
           WAD+  L+K    K  QNA  I RAW +R
Sbjct: 343 WADD-ALHKYLNLKEVQNALGIDRAWKDR 370


>Z69636-2|CAA93463.3|  247|Caenorhabditis elegans Hypothetical
           protein F20B10.3 protein.
          Length = 247

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = -2

Query: 185 IFKQHFEPALSTLICSK*NCRPTSTLT 105
           +F+    P +    CS  NC+PT TL+
Sbjct: 40  VFQSEQPPQVQQTPCSTGNCQPTPTLS 66


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,081,826
Number of Sequences: 27780
Number of extensions: 133017
Number of successful extensions: 238
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 238
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 238
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 397381406
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)