Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_O05
         (308 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0515 - 9046450-9046996,9047125-9047227,9047319-9047540,904...    26   5.2  
03_01_0322 + 2515949-2516330,2516418-2516579,2516900-2516940,251...    25   9.2  

>03_02_0515 -
           9046450-9046996,9047125-9047227,9047319-9047540,
           9048350-9048400,9048966-9049168,9049276-9049361
          Length = 403

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 9/27 (33%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
 Frame = +1

Query: 223 FQKRRFQI-NFMITPSHEGCKTNARIG 300
           FQ++   + N++++ SH GC   A++G
Sbjct: 220 FQRKALNLTNYLLSESHSGCSVFAQLG 246


>03_01_0322 +
           2515949-2516330,2516418-2516579,2516900-2516940,
           2517055-2517086,2519311-2519467
          Length = 257

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
 Frame = +1

Query: 85  FYTVIHSV*CAVGV-FI*-RHEWKRLSGFF*IILTTNEGLLQV 207
           +Y  +H   CAV   +I  +H  + L   F  ILTTN GL++V
Sbjct: 206 WYFALHVYSCAVFYEYIGVKHPARYLEAMFYTILTTNGGLMKV 248


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,997,939
Number of Sequences: 37544
Number of extensions: 109754
Number of successful extensions: 133
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 133
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 375959444
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)