Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_O05
         (308 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z66494-6|CAE48497.1|  423|Caenorhabditis elegans Hypothetical pr...    28   1.2  
Z66494-5|CAA91259.1|  473|Caenorhabditis elegans Hypothetical pr...    28   1.2  
U40410-2|AAL27229.1| 1876|Caenorhabditis elegans Lin-12 and glp-...    26   4.7  
Z81506-2|CAB04129.1|  257|Caenorhabditis elegans Hypothetical pr...    26   6.2  
U70848-3|AAB09111.2|  399|Caenorhabditis elegans Hypothetical pr...    26   6.2  
Z68314-7|CAA92662.2|  872|Caenorhabditis elegans Hypothetical pr...    25   8.1  

>Z66494-6|CAE48497.1|  423|Caenorhabditis elegans Hypothetical
           protein C34C6.5b protein.
          Length = 423

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = -3

Query: 294 TRVCFTTFVRRCYHEINLETPFLKSVNITNLK 199
           TRV    ++    HE +L+ PF+K V ++++K
Sbjct: 354 TRVNIAKYLLAIEHETHLDLPFVKHVEVSSMK 385


>Z66494-5|CAA91259.1|  473|Caenorhabditis elegans Hypothetical
           protein C34C6.5a protein.
          Length = 473

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = -3

Query: 294 TRVCFTTFVRRCYHEINLETPFLKSVNITNLK 199
           TRV    ++    HE +L+ PF+K V ++++K
Sbjct: 404 TRVNIAKYLLAIEHETHLDLPFVKHVEVSSMK 435


>U40410-2|AAL27229.1| 1876|Caenorhabditis elegans Lin-12 and glp-1
            x-hybridizingprotein 1, isoform a protein.
          Length = 1876

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = +2

Query: 134  DVMNGKGYQVFFKLF*QQTKGYFKFVILTDFKKGVSRLIS 253
            D +NGK +  + KLF       FKF I  +FKK +   +S
Sbjct: 1513 DAVNGKTFSDYKKLFENDVLKSFKFKI-KNFKKVIPNTLS 1551


>Z81506-2|CAB04129.1|  257|Caenorhabditis elegans Hypothetical
           protein F16H6.3 protein.
          Length = 257

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -3

Query: 153 PFPFMTSNKNPNCALD*MYDCIKKC 79
           P P++T   NP+  +D M  C K C
Sbjct: 83  PAPYLTEPINPDLVVDGMATCPKTC 107


>U70848-3|AAB09111.2|  399|Caenorhabditis elegans Hypothetical
           protein C43G2.4 protein.
          Length = 399

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
 Frame = +2

Query: 74  FIHFFIQSYIQSNAQLGFLF-DVMNGKGYQVFFKLF*QQTKGYFKFVILT 220
           F+  F+  +I+ +A   F + D  + KGY+  FK+   +   Y K + LT
Sbjct: 29  FLFLFLFYFIRFSAPHFFNYTDPTDSKGYRKIFKVMCNEFHEYTKMIPLT 78


>Z68314-7|CAA92662.2|  872|Caenorhabditis elegans Hypothetical
           protein F07H5.8 protein.
          Length = 872

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -3

Query: 123 PNCALD*MYDCIKKCINYTLDLPLI 49
           P+CA      C  +CI++TL LP++
Sbjct: 648 PSCAPQCQPACDPQCISFTLKLPVM 672


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,657,209
Number of Sequences: 27780
Number of extensions: 119720
Number of successful extensions: 197
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 192
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 197
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 333802358
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)