Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_O04
(436 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC4G3.02 |aph1||bis|Schizosaccharomyces pombe|chr 3|||Manual 29 0.41
SPCC18.09c |||conserved eukaryotic protein|Schizosaccharomyces p... 27 0.94
SPBC16A3.11 |eso1||sister chromatid cohesion protein Eso1|Schizo... 25 3.8
SPAC26F1.08c |||conserved protein|Schizosaccharomyces pombe|chr ... 25 5.0
SPAPJ698.03c |prp12|sap130|U2 snRNP-associated protein Sap130 |S... 25 5.0
SPCC1919.11 |mug137||BAR adaptor protein|Schizosaccharomyces pom... 25 5.0
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ... 25 5.0
SPAC4H3.12c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 25 6.7
SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic... 24 8.8
SPAC23H3.05c |swd1||COMPASS complex subunit Swd1|Schizosaccharom... 24 8.8
SPBC4F6.10 |vps901|vps9a|guanyl-nucleotide exchange factor Vps90... 24 8.8
>SPCC4G3.02 |aph1||bis|Schizosaccharomyces pombe|chr 3|||Manual
Length = 182
Score = 28.7 bits (61), Expect = 0.41
Identities = 11/37 (29%), Positives = 21/37 (56%)
Frame = +3
Query: 75 ISAKFVYEDDQCVAFHDVNPQAPTHILVIPRKPISQL 185
+ ++ Y AF ++ P P H+LVIP++ + +L
Sbjct: 12 VGSQVFYRTKLSAAFVNLKPILPGHVLVIPQRAVPRL 48
>SPCC18.09c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 232
Score = 27.5 bits (58), Expect = 0.94
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = +3
Query: 90 VYEDDQCVAFHDVNPQAPTHILVIPRKP 173
+Y DD V D+ P++ H+L++ R P
Sbjct: 52 IYYDDDVVLVRDMFPKSKMHLLLMTRDP 79
>SPBC16A3.11 |eso1||sister chromatid cohesion protein
Eso1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 872
Score = 25.4 bits (53), Expect = 3.8
Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = -1
Query: 253 YLLE*IHINLIPSNCSSSSPALESCEIGF-LGITRIWVGA 137
Y+++ + +N S S+ E+ GF LGI+RIWV A
Sbjct: 768 YIVDELELNNNNSTSSAVYIKNENLRKGFVLGISRIWVSA 807
>SPAC26F1.08c |||conserved protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 977
Score = 25.0 bits (52), Expect = 5.0
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = +2
Query: 305 FQCIIYIYIVCFLCPR 352
F CII+I+I CFL R
Sbjct: 136 FFCIIWIFIDCFLLTR 151
>SPAPJ698.03c |prp12|sap130|U2 snRNP-associated protein Sap130
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1206
Score = 25.0 bits (52), Expect = 5.0
Identities = 13/40 (32%), Positives = 19/40 (47%)
Frame = -3
Query: 434 YSL*PSTVNSVSNGCGFMLIGPVVFEFTLDKENKLYIYRL 315
YSL N V + C L G E + E++L IY++
Sbjct: 10 YSLTIQNSNYVQSSCAASLSGKKAQEIVIATESRLLIYKV 49
>SPCC1919.11 |mug137||BAR adaptor protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 420
Score = 25.0 bits (52), Expect = 5.0
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +1
Query: 340 SLSKVNSKTTGPISMKPQPFDT 405
SLSK+ +KTT + P PF T
Sbjct: 251 SLSKLFTKTTNTEKISPTPFST 272
>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 3655
Score = 25.0 bits (52), Expect = 5.0
Identities = 11/31 (35%), Positives = 20/31 (64%)
Frame = -3
Query: 278 YITTDTLILFIRIDTYKFNTQQLLIFISSFR 186
Y++T+T I+ R+++ +TQ L + SFR
Sbjct: 178 YLSTETSIIQQRVNSLAISTQPLELASQSFR 208
>SPAC4H3.12c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 101
Score = 24.6 bits (51), Expect = 6.7
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = +2
Query: 287 ILSLNTFQCIIYIYIVCFLC 346
IL LNT CI Y+Y + LC
Sbjct: 33 ILFLNTIVCIFYVYKIA-LC 51
>SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic
subunit Bgs1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1729
Score = 24.2 bits (50), Expect = 8.8
Identities = 20/91 (21%), Positives = 35/91 (38%), Gaps = 5/91 (5%)
Frame = -3
Query: 377 IGPVVFEFTLDKENKLYIYRLYI---EMYLGIRCNFYITTDTLILFIRIDTYKFNTQQLL 207
I PVVF F + + Y RL + + + C Y + L + T +
Sbjct: 428 IAPVVFIFASSTKEQHYASRLVVGIVHFFFSLVCVVYYSITPLRNLVGFTTKRSGKNLAN 487
Query: 206 IFISSFRKL*NWLPGYHKD--MGWCLWVHIM 120
F ++ N+ P + WCLW+ ++
Sbjct: 488 RFFTA-----NFTPTSKTGAFVSWCLWITVL 513
>SPAC23H3.05c |swd1||COMPASS complex subunit
Swd1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 398
Score = 24.2 bits (50), Expect = 8.8
Identities = 9/26 (34%), Positives = 13/26 (50%)
Frame = -3
Query: 398 NGCGFMLIGPVVFEFTLDKENKLYIY 321
N CGF G VF T + +Y++
Sbjct: 258 NSCGFSQTGEFVFATTYQMAHAIYVW 283
>SPBC4F6.10 |vps901|vps9a|guanyl-nucleotide exchange factor Vps901
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 537
Score = 24.2 bits (50), Expect = 8.8
Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 3/44 (6%)
Frame = -3
Query: 269 TDTLILFIRIDT---YKFNTQQLLIFISSFRKL*NWLPGYHKDM 147
T T +L + ID Y + +LL + SF K W+ Y+K M
Sbjct: 465 TQTSMLVLAIDLPIEYLVHIPRLLPILPSFMKSSQWMMDYNKMM 508
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,918,758
Number of Sequences: 5004
Number of extensions: 40479
Number of successful extensions: 105
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 105
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 156095170
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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