Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_O04
(436 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_1059 + 27273267-27273316,27274077-27274163,27274245-272743... 70 7e-13
03_02_0838 + 11641484-11642030,11643614-11643650,11643784-116438... 65 3e-11
11_03_0144 + 10724538-10724753,10726127-10726186 36 0.019
12_01_0796 + 7292523-7292783,7292963-7293018,7295274-7295331,729... 35 0.033
02_04_0333 + 22096960-22097445,22098508-22098643,22099159-220993... 31 0.54
11_04_0065 + 13082684-13084318,13084418-13084499,13085132-13085250 27 5.0
08_02_0698 - 20151374-20151526,20153024-20153110,20153327-20153701 27 6.6
08_02_0499 - 17820615-17822516,17823224-17823373,17823491-178235... 27 6.6
03_01_0630 + 4635297-4636220 27 6.6
01_06_0717 - 31446860-31447074,31447183-31447270,31448909-314490... 27 6.6
11_04_0441 + 17781533-17781775,17782007-17782114,17782386-177824... 27 8.7
08_02_0831 + 21619891-21620724 27 8.7
01_06_1012 - 33806190-33807875,33807963-33808331 27 8.7
01_02_0111 - 11220179-11220322,11220430-11220497,11220611-112206... 27 8.7
>06_03_1059 +
27273267-27273316,27274077-27274163,27274245-27274392,
27274615-27274732,27274798-27274859
Length = 154
Score = 70.1 bits (164), Expect = 7e-13
Identities = 35/70 (50%), Positives = 46/70 (65%), Gaps = 2/70 (2%)
Frame = +3
Query: 18 AKFAAPGGDTIFGKILRKEISAKFVYEDDQCVAFHDVNPQAPTHILVIP--RKPISQLSK 191
A A GG TIF KI+ KEI + VYED++ +AF D+NPQAP H+LVIP R ++ L K
Sbjct: 36 AATADTGGPTIFDKIIAKEIPSNVVYEDEKVLAFRDINPQAPVHVLVIPKIRDGLTGLDK 95
Query: 192 AGDEDEQLLG 221
A ++LG
Sbjct: 96 AEPRHVEILG 105
>03_02_0838 +
11641484-11642030,11643614-11643650,11643784-11643841,
11646176-11646265,11646796-11646913,11648093-11648277,
11648330-11648455,11648578-11648634,11648741-11648821,
11649068-11649102,11649265-11649354,11649443-11649599,
11649785-11649901
Length = 565
Score = 64.9 bits (151), Expect = 3e-11
Identities = 28/63 (44%), Positives = 46/63 (73%), Gaps = 2/63 (3%)
Frame = +3
Query: 39 GDTIFGKILRKEISAKFVYEDDQCVAFHDVNPQAPTHILVIP--RKPISQLSKAGDEDEQ 212
G +F KI++KEI + V++D++ +AF D+NPQAPTHI++IP + ++ LSKA + +
Sbjct: 192 GSQVFDKIIKKEIPSTVVFDDEKVLAFRDINPQAPTHIVIIPKVKDGLTGLSKAEERHVE 251
Query: 213 LLG 221
+LG
Sbjct: 252 ILG 254
>11_03_0144 + 10724538-10724753,10726127-10726186
Length = 91
Score = 35.5 bits (78), Expect = 0.019
Identities = 17/38 (44%), Positives = 22/38 (57%)
Frame = +3
Query: 30 APGGDTIFGKILRKEISAKFVYEDDQCVAFHDVNPQAP 143
A G +F +I+R E A VYEDD C+ D +P AP
Sbjct: 53 AEGKSCVFCRIIRGEAPAFKVYEDDVCLCILDSHPLAP 90
>12_01_0796 +
7292523-7292783,7292963-7293018,7295274-7295331,
7295777-7295843,7296461-7296516,7296638-7296691,
7296836-7296961
Length = 225
Score = 34.7 bits (76), Expect = 0.033
Identities = 16/50 (32%), Positives = 26/50 (52%)
Frame = +3
Query: 36 GGDTIFGKILRKEISAKFVYEDDQCVAFHDVNPQAPTHILVIPRKPISQL 185
G +F +I++ A +YEDD C+ D P + H L+IP++ L
Sbjct: 70 GQRCVFCEIVKGNKPAYKLYEDDVCLCILDTKPLSTGHSLIIPKRHFPSL 119
>02_04_0333 +
22096960-22097445,22098508-22098643,22099159-22099325,
22099447-22099567,22099660-22099760,22099908-22100006,
22100512-22100622,22100709-22100788,22100880-22100949,
22101880-22101965,22102097-22102166,22102250-22102338,
22102448-22102572,22102686-22102766,22102848-22102908,
22103002-22103060,22103134-22103273,22103391-22103480,
22103917-22103976,22104072-22104188
Length = 782
Score = 30.7 bits (66), Expect = 0.54
Identities = 17/63 (26%), Positives = 35/63 (55%), Gaps = 2/63 (3%)
Frame = +3
Query: 21 KFAAPGGDTIFGKILRKEISAKFVYEDDQCVA--FHDVNPQAPTHILVIPRKPISQLSKA 194
KF GG T +++R+++ AK++ E + F + Q T + ++P++ + QLS+
Sbjct: 203 KFTYRGGMTEEKRVMRRKVLAKWLKESILRLGPTFIKIGQQFSTRVDILPQEYVDQLSEL 262
Query: 195 GDE 203
D+
Sbjct: 263 QDQ 265
>11_04_0065 + 13082684-13084318,13084418-13084499,13085132-13085250
Length = 611
Score = 27.5 bits (58), Expect = 5.0
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = -1
Query: 211 CSSSSPALESCEIGFLGITRIWVGACGF 128
CS + PA +C G + W+GA GF
Sbjct: 234 CSETDPATGACLGGSMRSPTFWLGAVGF 261
>08_02_0698 - 20151374-20151526,20153024-20153110,20153327-20153701
Length = 204
Score = 27.1 bits (57), Expect = 6.6
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = -3
Query: 137 LWVHIMKSYTLIIFIDEFCRYFFA*YFPKYSI 42
L +H + +YTLII C FF+ + PK ++
Sbjct: 148 LSLHRLPAYTLIIECTNICMCFFSGFNPKENV 179
>08_02_0499 -
17820615-17822516,17823224-17823373,17823491-17823568,
17823948-17824061,17824145-17824297,17826928-17827071,
17827162-17827516,17828574-17828741,17829522-17829751,
17829916-17830049,17830686-17830749
Length = 1163
Score = 27.1 bits (57), Expect = 6.6
Identities = 13/23 (56%), Positives = 16/23 (69%)
Frame = -3
Query: 248 IRIDTYKFNTQQLLIFISSFRKL 180
I IDT KF T++L + SFRKL
Sbjct: 181 IYIDTLKFPTKKLRRYYESFRKL 203
>03_01_0630 + 4635297-4636220
Length = 307
Score = 27.1 bits (57), Expect = 6.6
Identities = 16/36 (44%), Positives = 18/36 (50%), Gaps = 10/36 (27%)
Frame = -1
Query: 211 CSSSSPALES----------CEIGFLGITRIWVGAC 134
CSSS PALES C+ G G T W+ AC
Sbjct: 238 CSSSLPALESKWHGPYSDDSCKGGVYGFTEEWLAAC 273
>01_06_0717 -
31446860-31447074,31447183-31447270,31448909-31449012,
31449618-31449745,31450461-31450555,31461823-31463115,
31463188-31464039,31464568-31464621
Length = 942
Score = 27.1 bits (57), Expect = 6.6
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = -2
Query: 399 EWLWFHADRSSSFRVYLGQRK 337
E +WFH D+ SS VYL +K
Sbjct: 762 EDVWFHVDKVSSAHVYLRLKK 782
>11_04_0441 +
17781533-17781775,17782007-17782114,17782386-17782471,
17782546-17782807,17782921-17783120,17783770-17784012,
17784118-17784394,17784625-17784759,17784880-17784960,
17785311-17785406,17785661-17785756,17785834-17785890,
17785967-17786035,17786154-17786240,17786534-17786635,
17786730-17786819,17786900-17786980,17787573-17787653,
17787761-17787856,17787937-17787993,17788093-17788137,
17788218-17788346
Length = 906
Score = 26.6 bits (56), Expect = 8.7
Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Frame = -3
Query: 95 IDEFCRYFFA*-YFPKYSIATGSSKFREFYH 6
+DEF + FA + PKY + G +RE H
Sbjct: 807 VDEFNEHIFAGIHLPKYYVIRGVMDYREMLH 837
>08_02_0831 + 21619891-21620724
Length = 277
Score = 26.6 bits (56), Expect = 8.7
Identities = 9/26 (34%), Positives = 16/26 (61%)
Frame = -3
Query: 143 WCLWVHIMKSYTLIIFIDEFCRYFFA 66
W LWV+++ + LI+ + F + FA
Sbjct: 72 WLLWVYLLAMFALIVALLGFTAFAFA 97
>01_06_1012 - 33806190-33807875,33807963-33808331
Length = 684
Score = 26.6 bits (56), Expect = 8.7
Identities = 10/31 (32%), Positives = 17/31 (54%)
Frame = -3
Query: 164 GYHKDMGWCLWVHIMKSYTLIIFIDEFCRYF 72
GY+K++GW + V +S L + C Y+
Sbjct: 476 GYYKELGWSVEVEFDESILLWHIATDLCFYY 506
>01_02_0111 -
11220179-11220322,11220430-11220497,11220611-11220644,
11220735-11220766,11220900-11220959,11221276-11221729
Length = 263
Score = 26.6 bits (56), Expect = 8.7
Identities = 8/15 (53%), Positives = 13/15 (86%)
Frame = +3
Query: 123 DVNPQAPTHILVIPR 167
D +P+APTH+ ++PR
Sbjct: 35 DTSPRAPTHVALLPR 49
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,712,961
Number of Sequences: 37544
Number of extensions: 226671
Number of successful extensions: 495
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 489
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 494
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 826450812
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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