Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_O03
         (518 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    23   1.4  
DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    22   4.3  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    21   5.7  
DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    21   5.7  

>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 23.4 bits (48), Expect = 1.4
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = +3

Query: 6   RVH*PASHVNVSQNLNKLVKSP 71
           R H P +  N++Q L+KL++SP
Sbjct: 879 RTHRP-TFANLTQTLDKLIRSP 899


>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 21.8 bits (44), Expect = 4.3
 Identities = 11/37 (29%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
 Frame = -3

Query: 342 MTGASGNSKSKRACLVSPAFNTATG--IFTDSCNDIV 238
           +TG  GN  +    + +PA  TAT   +F+ + +D++
Sbjct: 52  VTGIFGNITTCTVIIKNPAMQTATNYYLFSLAISDLI 88


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 21.4 bits (43), Expect = 5.7
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = -1

Query: 203 RPDQVVLDG*PAYYCVDILL*PLGPMFLTDVT 108
           RPD     G PA   VDI++  +GP+   D+T
Sbjct: 22  RPD---FGGPPATVEVDIMVRSMGPISEVDMT 50


>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 21.4 bits (43), Expect = 5.7
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = +2

Query: 353 IQGSGPVHLIG 385
           I GSG VHL+G
Sbjct: 181 IAGSGAVHLVG 191


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 113,442
Number of Sequences: 438
Number of extensions: 2194
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14477538
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)