Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_O02
         (386 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC644.15 |rpp101|rpp1-1|60S acidic ribosomal protein Rpp1-1|Sc...    77   1e-15
SPBC3B9.13c |rpp102|rpp1-2|60S acidic ribosomal protein Rpp1-2|S...    76   2e-15
SPCP1E11.09c |rpp103|rpp1-3|60S acidic ribosomal protein Rpp1-3|...    70   1e-13
SPCC18B5.07c |nup61||nucleoporin Nup61|Schizosaccharomyces pombe...    27   1.4  
SPAC22F3.05c |alp41||ADP-ribosylation factor Alp41|Schizosacchar...    26   2.4  
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    24   7.2  

>SPAC644.15 |rpp101|rpp1-1|60S acidic ribosomal protein
           Rpp1-1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 109

 Score = 77.0 bits (181), Expect = 1e-15
 Identities = 35/64 (54%), Positives = 49/64 (76%)
 Frame = +3

Query: 75  SKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLITN 254
           S +ELA  YSALIL D+ + +T +K+ ++ KAA VDVEP W  +FAKALEG ++++L+ N
Sbjct: 2   SASELATSYSALILADEGIEITSDKLLSLTKAANVDVEPIWATIFAKALEGKDLKELLLN 61

Query: 255 IGSG 266
           IGSG
Sbjct: 62  IGSG 65


>SPBC3B9.13c |rpp102|rpp1-2|60S acidic ribosomal protein
           Rpp1-2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 110

 Score = 76.2 bits (179), Expect = 2e-15
 Identities = 38/104 (36%), Positives = 53/104 (50%)
 Frame = +3

Query: 75  SKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLITN 254
           S +ELA  YSALIL D+ + +T +K+ ++ KAA VDVEP W  +FAKALEG ++++L+ N
Sbjct: 2   SASELATSYSALILADEGIEITSDKLLSLTKAANVDVEPIWATIFAKALEGKDLKELLLN 61

Query: 255 IGSGVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDDDMG 386
           IGS                                    D+DMG
Sbjct: 62  IGSAAAAPAAGGAGAPAAAAGGEAAAEEQKEEAKEEEESDEDMG 105


>SPCP1E11.09c |rpp103|rpp1-3|60S acidic ribosomal protein
           Rpp1-3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 109

 Score = 70.1 bits (164), Expect = 1e-13
 Identities = 31/63 (49%), Positives = 47/63 (74%)
 Frame = +3

Query: 75  SKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLITN 254
           S +ELA  Y+ALIL D+ + +T +K+ ++ KA  V+VEP W  +FAKALEG ++++L+ N
Sbjct: 2   SASELATSYAALILADEGIEITSDKLLSLTKAGNVEVEPIWATIFAKALEGKDLKELLLN 61

Query: 255 IGS 263
           IGS
Sbjct: 62  IGS 64


>SPCC18B5.07c |nup61||nucleoporin Nup61|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 565

 Score = 26.6 bits (56), Expect = 1.4
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = -1

Query: 200 RPVRLNIYSSRFQYG*DFLTGNGDIVIYQDKGGVNTS 90
           +PV L   +++F +G   +T N D  I+  K G+N S
Sbjct: 66  KPVSLPASTTQFTFGKPAVTANNDSDIHLKKRGLNKS 102


>SPAC22F3.05c |alp41||ADP-ribosylation factor
           Alp41|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 186

 Score = 25.8 bits (54), Expect = 2.4
 Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 3/53 (5%)
 Frame = +3

Query: 102 SALILVD-DDV--AVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLIT 251
           S L+L +  DV  A++ E+IS IL  +      +W      AL G+N++D I+
Sbjct: 119 SILVLANKSDVSGALSSEEISKILNISKYK-SSHWRIFSVSALTGLNIKDAIS 170


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 24.2 bits (50), Expect = 7.2
 Identities = 10/26 (38%), Positives = 18/26 (69%)
 Frame = -2

Query: 187 STSTAAAFSMVEIFSPVTATSSSTRI 110
           +TST+  ++   I SP + +SSST++
Sbjct: 592 TTSTSVLYTSTPITSPNSTSSSSTQV 617


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,159,189
Number of Sequences: 5004
Number of extensions: 19054
Number of successful extensions: 53
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 53
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 128344734
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)