Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_O01
         (346 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1827.07c ||SPCP1E11.01c|SPX/EXS domain protein|Schizosacchar...    25   3.3  
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual        24   7.6  

>SPCC1827.07c ||SPCP1E11.01c|SPX/EXS domain
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 682

 Score = 25.0 bits (52), Expect = 3.3
 Identities = 13/42 (30%), Positives = 23/42 (54%)
 Frame = -2

Query: 330 YSFLKHKLFIYNKQILPMIFVLLKSNINKNL*ITYITFKNHI 205
           + F +H++    KQ+ P I  ++ + I ++  I Y  F NHI
Sbjct: 558 WQFREHRIL---KQLWPYIIAMILNFIVRSSFIFYCIFPNHI 596


>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 4717

 Score = 23.8 bits (49), Expect = 7.6
 Identities = 8/27 (29%), Positives = 16/27 (59%)
 Frame = -2

Query: 330 YSFLKHKLFIYNKQILPMIFVLLKSNI 250
           Y F+K   F+Y+K ++P   V++   +
Sbjct: 343 YKFIKRVAFLYHKFMIPSDHVVISQEL 369


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 843,413
Number of Sequences: 5004
Number of extensions: 11638
Number of successful extensions: 18
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 102111100
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)