Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_O01
         (346 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_03_0044 - 14021874-14022050,14022235-14022390,14023024-140232...    27   3.0  
02_01_0087 + 623174-623421,623576-623693,624266-624588,625267-62...    26   6.9  
10_08_0735 - 20200229-20200693,20200813-20201823,20202172-202022...    26   9.1  
03_05_0374 - 23589944-23590432,23590551-23590961,23591404-235915...    26   9.1  

>03_03_0044 -
           14021874-14022050,14022235-14022390,14023024-14023203,
           14023816-14024074,14024178-14024416,14025180-14025260,
           14025320-14025328
          Length = 366

 Score = 27.5 bits (58), Expect = 3.0
 Identities = 10/14 (71%), Positives = 11/14 (78%)
 Frame = +3

Query: 240 GFYLCYFSVKQISL 281
           GFY+CYFS  QI L
Sbjct: 57  GFYVCYFSFNQIDL 70


>02_01_0087 +
           623174-623421,623576-623693,624266-624588,625267-625551,
           625643-625823,625964-626119
          Length = 436

 Score = 26.2 bits (55), Expect = 6.9
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = -2

Query: 339 LSLYSFLKHKLFIYNKQILPMIFVLLKSNI 250
           L++YS L HK F +   +LP++F+    N+
Sbjct: 313 LAVYSILGHKEFRFVLPVLPLMFMFSGYNL 342


>10_08_0735 -
           20200229-20200693,20200813-20201823,20202172-20202272,
           20203424-20203562
          Length = 571

 Score = 25.8 bits (54), Expect = 9.1
 Identities = 11/20 (55%), Positives = 15/20 (75%), Gaps = 2/20 (10%)
 Frame = +3

Query: 162 SLKLKHVNIEI--WLELYDF 215
           SL+LKHVNI I  W  L+++
Sbjct: 320 SLQLKHVNISIYPWFNLFEY 339


>03_05_0374 -
           23589944-23590432,23590551-23590961,23591404-23591535,
           23591885-23591962
          Length = 369

 Score = 25.8 bits (54), Expect = 9.1
 Identities = 11/20 (55%), Positives = 15/20 (75%), Gaps = 2/20 (10%)
 Frame = +3

Query: 162 SLKLKHVNIEI--WLELYDF 215
           SL+LKHVNI I  W  L+++
Sbjct: 110 SLQLKHVNISIYPWFNLFEY 129


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,254,428
Number of Sequences: 37544
Number of extensions: 48584
Number of successful extensions: 53
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 53
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 494158076
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)