Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_N24
         (328 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch...   145   2e-36
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar...   145   2e-36
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces...    64   4e-12
SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase ki...    25   3.8  
SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase Abc4|...    24   5.1  
SPBC1685.05 |||serine protease |Schizosaccharomyces pombe|chr 2|...    24   6.7  
SPBC1604.19c |||TRAPP complex subunit Trs85 |Schizosaccharomyces...    24   6.7  
SPAC17A5.09c |||protein phosphatase regulatory subunit Glc9|Schi...    24   6.7  
SPAC4D7.10c |||SAGA complex subunit Spt20 |Schizosaccharomyces p...    23   8.8  
SPCC364.03 |rpl1702|rpl17-2, rpl17|60S ribosomal protein L17|Sch...    23   8.8  

>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 455

 Score =  145 bits (351), Expect = 2e-36
 Identities = 65/72 (90%), Positives = 70/72 (97%)
 Frame = -2

Query: 327 LAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAA 148
           +AKV RAVCMLSNTT+IAEAW+RLDHKFDLMY+KRAFVHWYVGEGMEEGEFSEAREDLAA
Sbjct: 372 IAKVNRAVCMLSNTTSIAEAWSRLDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAA 431

Query: 147 LEKDYEEVGMDS 112
           LE+DYEEVG DS
Sbjct: 432 LERDYEEVGQDS 443


>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
           2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 449

 Score =  145 bits (351), Expect = 2e-36
 Identities = 65/72 (90%), Positives = 70/72 (97%)
 Frame = -2

Query: 327 LAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAA 148
           +AKV RAVCMLSNTT+IAEAW+RLDHKFDLMY+KRAFVHWYVGEGMEEGEFSEAREDLAA
Sbjct: 368 IAKVDRAVCMLSNTTSIAEAWSRLDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAA 427

Query: 147 LEKDYEEVGMDS 112
           LE+DYEEVG DS
Sbjct: 428 LERDYEEVGQDS 439


>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 448

 Score = 64.5 bits (150), Expect = 4e-12
 Identities = 28/71 (39%), Positives = 46/71 (64%), Gaps = 3/71 (4%)
 Frame = -2

Query: 318 VQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAR---EDLAA 148
           ++ +   + N+T+I E + RL  +F  M+ ++AF+HWY GEGM+E EF+EA     DL +
Sbjct: 361 LKMSATFIGNSTSIQEIFRRLGDQFSAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVS 420

Query: 147 LEKDYEEVGMD 115
             + Y+E G+D
Sbjct: 421 EYQQYQEAGID 431


>SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase kinase
            Win1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1436

 Score = 24.6 bits (51), Expect = 3.8
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = -2

Query: 303  CMLSNTTAIAEAWARLDHKFDLMY 232
            C++      +  W RLD+ F LMY
Sbjct: 1336 CVIVEMATGSPPWPRLDNHFSLMY 1359


>SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase
           Abc4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1469

 Score = 24.2 bits (50), Expect = 5.1
 Identities = 17/49 (34%), Positives = 27/49 (55%)
 Frame = +1

Query: 22  ISPWNVSVCEPPSNIFIGLVLFGSLTLSLGGVHADFFVVLLESGQVLTS 168
           +S + VSVC+  S I +  +L    + S   V+   ++VLL +G  LTS
Sbjct: 301 VSSFMVSVCQFLSPIALNRLLKHLESPSSSSVNPLVWIVLLLTGPFLTS 349


>SPBC1685.05 |||serine protease |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 997

 Score = 23.8 bits (49), Expect = 6.7
 Identities = 17/73 (23%), Positives = 35/73 (47%), Gaps = 2/73 (2%)
 Frame = +1

Query: 55   PSNIFIGLVLFGSLTLSLGGVHADFFVVLLESGQVLTSFGEL--TLLHTLTDVPVHEGAL 228
            P  +++G +L+GS  L++  + A  ++V ++ G  + +F +    LL   TD  V    +
Sbjct: 896  PEGVYVGSILYGSPALNM--LRAAHWIVAVD-GHDINTFDDFYHMLLEKPTDTFVQVKQM 952

Query: 229  SVHQVELVVETSP 267
            +      +V   P
Sbjct: 953  NRRGATSIVSVRP 965


>SPBC1604.19c |||TRAPP complex subunit Trs85 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 658

 Score = 23.8 bits (49), Expect = 6.7
 Identities = 14/47 (29%), Positives = 18/47 (38%), Gaps = 1/47 (2%)
 Frame = -3

Query: 203 SVRVWRRVSSPKLVRT-WPLSRRTTKKSAWTPPRERVREPKSTKPMN 66
           S   WR     K+    W L+ R   KS W    E + + K T   N
Sbjct: 604 SAGFWRDCGHCKMAEICWNLANRVYSKSGWESLSEHMLDLKPTLSEN 650


>SPAC17A5.09c |||protein phosphatase regulatory subunit
           Glc9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 310

 Score = 23.8 bits (49), Expect = 6.7
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -2

Query: 198 EGMEEGEFSEAREDLAALEKDYEEV 124
           E MEE   SEA E++   + D+ E+
Sbjct: 241 EAMEEEALSEAEENIPKKKPDFNEL 265


>SPAC4D7.10c |||SAGA complex subunit Spt20 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 473

 Score = 23.4 bits (48), Expect = 8.8
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = -3

Query: 167 LVRTWPLSRRTTKKSAWTPPRERVREPKSTKPMNMF 60
           LV++ P+ R+TT K    PP   ++ P   KPM  F
Sbjct: 331 LVQSAPVQRKTTPKIQRLPP-SSIQIP-PPKPMQKF 364


>SPCC364.03 |rpl1702|rpl17-2, rpl17|60S ribosomal protein
           L17|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 187

 Score = 23.4 bits (48), Expect = 8.8
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = +2

Query: 185 SSIPSPTYQCTKARLAYIKSNLWSRRAQASAI 280
           S+ P+   +C KAR AY++++  + R  A  I
Sbjct: 5   SAAPALETKCAKARGAYLRTHFKNSREVAFTI 36


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,018,275
Number of Sequences: 5004
Number of extensions: 16389
Number of successful extensions: 73
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 72
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 73
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 89857768
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)