Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_N24
         (328 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    22   1.6  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    22   2.2  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                21   3.8  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    21   5.0  
AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    21   5.0  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    21   5.0  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    21   5.0  
L10430-1|AAA27731.1|  150|Apis mellifera transposase protein.          20   6.6  
AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    20   6.6  
AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    20   6.6  
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    20   6.6  
AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    20   6.6  
DQ325077-1|ABD14091.1|  181|Apis mellifera complementary sex det...    20   8.8  
DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex det...    20   8.8  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    20   8.8  
AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    20   8.8  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    20   8.8  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    20   8.8  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    20   8.8  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    20   8.8  

>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 22.2 bits (45), Expect = 1.6
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = -2

Query: 297 LSNTTAIAEAWARLDHKFD 241
           L+NT  +   W  LD+ FD
Sbjct: 32  LTNTLNVIHKWKYLDYDFD 50


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 21.8 bits (44), Expect = 2.2
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = +2

Query: 173 ENSPSSIPSPTYQCTKARLAYIKSNLW 253
           E   ++I   TYQC   + A+ + NL+
Sbjct: 51  ETPLTNIEEKTYQCLLCQKAFDQKNLY 77


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 21.0 bits (42), Expect = 3.8
 Identities = 8/19 (42%), Positives = 10/19 (52%)
 Frame = +1

Query: 268 GLGDSGGIGQHADGALHLG 324
           GLG   G G+H  G   +G
Sbjct: 203 GLGVQNGYGRHLPGHAQMG 221


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 20.6 bits (41), Expect = 5.0
 Identities = 11/31 (35%), Positives = 14/31 (45%)
 Frame = +1

Query: 211 VHEGALSVHQVELVVETSPGLGDSGGIGQHA 303
           VHE      +  LV E    + D+  I QHA
Sbjct: 496 VHEDVSPTFEKPLVREIEKTIDDARFIAQHA 526


>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 20.6 bits (41), Expect = 5.0
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = +1

Query: 229 SVHQVELVVETSPGL 273
           +VH   LVVET+ GL
Sbjct: 32  NVHNDPLVVETTSGL 46


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 20.6 bits (41), Expect = 5.0
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = +2

Query: 179 SPSSIPSPTYQC 214
           SP++ PSP  QC
Sbjct: 740 SPNASPSPAEQC 751


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 20.6 bits (41), Expect = 5.0
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = +1

Query: 229 SVHQVELVVETSPGL 273
           +VH   LVVET+ GL
Sbjct: 32  NVHNDPLVVETTSGL 46


>L10430-1|AAA27731.1|  150|Apis mellifera transposase protein.
          Length = 150

 Score = 20.2 bits (40), Expect = 6.6
 Identities = 6/18 (33%), Positives = 10/18 (55%)
 Frame = -3

Query: 155 WPLSRRTTKKSAWTPPRE 102
           W +     +K +W+ PRE
Sbjct: 35  WVVYNNIKRKRSWSRPRE 52


>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 20.2 bits (40), Expect = 6.6
 Identities = 16/51 (31%), Positives = 21/51 (41%)
 Frame = -3

Query: 209 GTSVRVWRRVSSPKLVRTWPLSRRTTKKSAWTPPRERVREPKSTKPMNMFE 57
           G ++R+ R      LVR   LSR     S W    E V  P   +P   +E
Sbjct: 202 GRALRILRLAKLLSLVRLLRLSRLVRYVSQW----EEVYIPLYQQPERHYE 248


>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 20.2 bits (40), Expect = 6.6
 Identities = 6/18 (33%), Positives = 10/18 (55%)
 Frame = -3

Query: 155 WPLSRRTTKKSAWTPPRE 102
           W +     +K +W+ PRE
Sbjct: 156 WVVYNNIKRKRSWSRPRE 173


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 20.2 bits (40), Expect = 6.6
 Identities = 12/48 (25%), Positives = 23/48 (47%)
 Frame = +1

Query: 34  NVSVCEPPSNIFIGLVLFGSLTLSLGGVHADFFVVLLESGQVLTSFGE 177
           N+S+ EPP    + L L  SL  +L     + + ++ E    + ++ E
Sbjct: 240 NISLDEPPLGKNLNLSLHASLNHTLTKDQPETYELVKEWRDFVDNYAE 287


>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 20.2 bits (40), Expect = 6.6
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = +1

Query: 7   GLFSFISPWNVSVCEPPSNIFIGLVLFGSLTLSLGG 114
           G  S +S W V + E   +   G  +  +L L LGG
Sbjct: 85  GRLSEVSNWKVLLLEAGPDEPAGAEIPSNLQLYLGG 120


>DQ325077-1|ABD14091.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 19.8 bits (39), Expect = 8.8
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -3

Query: 140 RTTKKSAWTPPRERVREPK 84
           R+ ++S     RER REPK
Sbjct: 62  RSKERSRDRTERERSREPK 80


>DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex
           determiner protein.
          Length = 191

 Score = 19.8 bits (39), Expect = 8.8
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -3

Query: 140 RTTKKSAWTPPRERVREPK 84
           R+ ++S     RER REPK
Sbjct: 62  RSKERSRDRTERERSREPK 80


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 19.8 bits (39), Expect = 8.8
 Identities = 11/31 (35%), Positives = 14/31 (45%)
 Frame = -3

Query: 209 GTSVRVWRRVSSPKLVRTWPLSRRTTKKSAW 117
           G ++R+ R      LVR   LSR     S W
Sbjct: 202 GRALRILRLAKLLSLVRLLRLSRLVRYVSQW 232


>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 19.8 bits (39), Expect = 8.8
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -3

Query: 140 RTTKKSAWTPPRERVREPK 84
           R+ ++S     RER REPK
Sbjct: 295 RSKERSRDRTERERSREPK 313


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 19.8 bits (39), Expect = 8.8
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = +1

Query: 238 QVELVVETSPGL 273
           QVE V+E  PGL
Sbjct: 203 QVESVIEFEPGL 214


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 19.8 bits (39), Expect = 8.8
 Identities = 11/31 (35%), Positives = 14/31 (45%)
 Frame = -3

Query: 209 GTSVRVWRRVSSPKLVRTWPLSRRTTKKSAW 117
           G ++R+ R      LVR   LSR     S W
Sbjct: 202 GRALRILRLAKLLSLVRLLRLSRLVRYVSQW 232


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 19.8 bits (39), Expect = 8.8
 Identities = 6/9 (66%), Positives = 8/9 (88%)
 Frame = +2

Query: 29  RGMYRCVSR 55
           RGMY+C+ R
Sbjct: 394 RGMYQCIVR 402


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 19.8 bits (39), Expect = 8.8
 Identities = 6/9 (66%), Positives = 8/9 (88%)
 Frame = +2

Query: 29  RGMYRCVSR 55
           RGMY+C+ R
Sbjct: 394 RGMYQCIVR 402


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 68,764
Number of Sequences: 438
Number of extensions: 1173
Number of successful extensions: 20
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  7217694
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)