Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_N23
         (431 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_02_0405 - 8597807-8598045,8599218-8599284,8599571-8599636,859...    29   2.1  
03_05_0155 - 21307001-21307239,21308217-21308320,21308564-213087...    29   2.1  
09_02_0476 + 9728729-9730739,9730930-9730991                           27   4.9  
03_06_0486 - 34261577-34261692,34261830-34262094,34263164-342632...    27   4.9  

>09_02_0405 -
           8597807-8598045,8599218-8599284,8599571-8599636,
           8599731-8599795,8600514-8600872,8601118-8601125,
           8601567-8601656,8601770-8601962,8603518-8603608,
           8603948-8604080,8605340-8605480,8605601-8605662,
           8605743-8605830,8606107-8606536,8606651-8606757
          Length = 712

 Score = 28.7 bits (61), Expect = 2.1
 Identities = 16/55 (29%), Positives = 28/55 (50%)
 Frame = -3

Query: 378 MHCFIAVLVLYTYRMNLMSVLLFSLIDFIIVQE*NMAMTIEFIMSSISSLSRWNV 214
           +HC I  L+ Y +  +L  +        + VQ    ++ +E ++SSI  +S WNV
Sbjct: 340 VHCLIRTLLQYRHMQDLRCI--------VFVQRVITSIVLEPLLSSIHQMSGWNV 386


>03_05_0155 -
           21307001-21307239,21308217-21308320,21308564-21308772,
           21308773-21308838,21308933-21308997,21309716-21309942,
           21310156-21310269,21310515-21310522,21310964-21311053,
           21311167-21311359,21312934-21313024,21313364-21313496,
           21314756-21314896,21315017-21315078,21315159-21315246,
           21315523-21315952,21316067-21316173
          Length = 788

 Score = 28.7 bits (61), Expect = 2.1
 Identities = 15/55 (27%), Positives = 30/55 (54%)
 Frame = -3

Query: 378 MHCFIAVLVLYTYRMNLMSVLLFSLIDFIIVQE*NMAMTIEFIMSSISSLSRWNV 214
           +HC I  L+ Y +  +L  ++    ++ +I      ++ +E ++SSI  +S WNV
Sbjct: 340 VHCLIRTLLQYRHMQDLRCIVF---VERVIT-----SIVLEHLLSSIHQMSGWNV 386


>09_02_0476 + 9728729-9730739,9730930-9730991
          Length = 690

 Score = 27.5 bits (58), Expect = 4.9
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +1

Query: 136 NRKLNFYRYHRRNTYFKAYKN 198
           N ++ F RY   NT FKAY N
Sbjct: 420 NHRIGFARYSGDNTTFKAYSN 440


>03_06_0486 -
           34261577-34261692,34261830-34262094,34263164-34263277,
           34263371-34264795
          Length = 639

 Score = 27.5 bits (58), Expect = 4.9
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = -2

Query: 298 FYHCSGIEHGNDNRIYNEFHIIIVSLERFIAQKC 197
           F+    I HG+  R +++  +I++SLE  I + C
Sbjct: 605 FHELIEIPHGDRRRYHDDVSVIVISLEGRIWRSC 638


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,608,716
Number of Sequences: 37544
Number of extensions: 130139
Number of successful extensions: 173
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 173
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 814473264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)