Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_N23
         (431 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z74033-5|CAF31473.1|  333|Caenorhabditis elegans Hypothetical pr...    30   0.82 
Z74476-4|CAA98966.1|  255|Caenorhabditis elegans Hypothetical pr...    27   7.7  

>Z74033-5|CAF31473.1|  333|Caenorhabditis elegans Hypothetical
           protein F38B7.7 protein.
          Length = 333

 Score = 29.9 bits (64), Expect = 0.82
 Identities = 16/67 (23%), Positives = 36/67 (53%)
 Frame = -2

Query: 406 NCLCMY*FINALFYSSFSFIYI*NEFNVCVTL*FN*FYHCSGIEHGNDNRIYNEFHIIIV 227
           N +C+Y  ++ ++  + +FI +     +     ++ F   + I+  N   + NE+ II+V
Sbjct: 53  NLICVYRSLSNIYILATTFIGLFLPKTIIGCSPYHPFIESTLIQVSNSLYLGNEYQIILV 112

Query: 226 SLERFIA 206
           ++ RF+A
Sbjct: 113 AINRFVA 119


>Z74476-4|CAA98966.1|  255|Caenorhabditis elegans Hypothetical
           protein W05B10.4 protein.
          Length = 255

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 16/67 (23%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
 Frame = +2

Query: 158 DTIVGIPTSKRIKTFL-CNETFQRDNDDMELIINSIVIAMFYS*TMIKSIKLKSNTDIKF 334
           DT++GIPT+ R  + L  N T    +D  ++ +  +        T  K+I++ ++T  + 
Sbjct: 41  DTLLGIPTTSRSNSLLSLNSTDSNISDSSDVGVLKVDTRSVKQCTDYKTIRVTNSTTARQ 100

Query: 335 ILYVYKT 355
           ++  + T
Sbjct: 101 VVEKFLT 107


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,176,667
Number of Sequences: 27780
Number of extensions: 145365
Number of successful extensions: 329
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 328
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 329
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 724655464
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)