Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_N23
         (431 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ494417-1|ABF55368.1|   42|Apis mellifera telomerase reverse tr...    23   1.1  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    22   2.6  
DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex det...    21   5.9  
DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex det...    21   5.9  
DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex det...    21   5.9  
DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex det...    21   5.9  
DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex det...    21   5.9  
DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex det...    21   5.9  
AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    21   5.9  
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    21   5.9  

>DQ494417-1|ABF55368.1|   42|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 42

 Score = 23.4 bits (48), Expect = 1.1
 Identities = 7/22 (31%), Positives = 14/22 (63%)
 Frame = +1

Query: 238 YGTHYKFYCHCHVLFLNNDKIN 303
           +GT+++ YC  H + +  +K N
Sbjct: 14  FGTYFQQYCLHHKILIKKNKCN 35


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 22.2 bits (45), Expect = 2.6
 Identities = 16/58 (27%), Positives = 29/58 (50%), Gaps = 4/58 (6%)
 Frame = -3

Query: 405 IVYVCINLL----MHCFIAVLVLYTYRMNLMSVLLFSLIDFIIVQE*NMAMTIEFIMS 244
           +++V IN+L    + CF+   +  T  +  + + LF   D  I+ E   A  I+F +S
Sbjct: 10  VLFVIINVLLHGQVICFVCKDITSTSALYRLKLYLFCDYDRDIIPEQKNATKIDFGLS 67


>DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 21.0 bits (42), Expect = 5.9
 Identities = 9/24 (37%), Positives = 11/24 (45%)
 Frame = +1

Query: 136 NRKLNFYRYHRRNTYFKAYKNIFV 207
           N   N Y  +  N Y K YKN  +
Sbjct: 99  NNYNNNYNNNYNNNYKKLYKNYII 122


>DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 21.0 bits (42), Expect = 5.9
 Identities = 9/24 (37%), Positives = 11/24 (45%)
 Frame = +1

Query: 136 NRKLNFYRYHRRNTYFKAYKNIFV 207
           N   N Y  +  N Y K YKN  +
Sbjct: 99  NNYNNNYNNNYNNNYKKLYKNYII 122


>DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex
           determiner protein.
          Length = 186

 Score = 21.0 bits (42), Expect = 5.9
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = +1

Query: 388 NTYINNCLELYISM 429
           N Y NNC +LY ++
Sbjct: 103 NNYNNNCKKLYYNI 116


>DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 21.0 bits (42), Expect = 5.9
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = +1

Query: 388 NTYINNCLELYISM 429
           N Y NNC +LY ++
Sbjct: 103 NNYNNNCKKLYYNI 116


>DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 21.0 bits (42), Expect = 5.9
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = +1

Query: 388 NTYINNCLELYISM 429
           N Y NNC +LY ++
Sbjct: 103 NNYNNNCKKLYYNI 116


>DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 21.0 bits (42), Expect = 5.9
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = +1

Query: 388 NTYINNCLELYISM 429
           N Y NNC +LY ++
Sbjct: 103 NNYNNNCKKLYYNI 116


>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 21.0 bits (42), Expect = 5.9
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = +1

Query: 388 NTYINNCLELYISM 429
           N Y NNC +LY ++
Sbjct: 345 NNYNNNCKKLYYNI 358


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
          beta-synthase protein.
          Length = 504

 Score = 21.0 bits (42), Expect = 5.9
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = -2

Query: 28 CRFLQPGGS 2
          C FL PGGS
Sbjct: 68 CEFLNPGGS 76


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 99,919
Number of Sequences: 438
Number of extensions: 2008
Number of successful extensions: 11
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 11244597
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)