Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_N22
         (281 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6F12.05c |tnr3||thiamine diphosphokinase Tnr3 |Schizosacchar...    25   2.1  
SPBC3E7.05c |||conserved eukaryotic protein|Schizosaccharomyces ...    25   2.1  
SPAC17C9.12 |||MSP domain|Schizosaccharomyces pombe|chr 1|||Manual     25   2.7  
SPAC7D4.03c |||conserved fungal family|Schizosaccharomyces pombe...    24   3.6  
SPAC1142.08 |fhl1|SPAC8C9.01|fork head transcription factor Fhl1...    23   6.3  
SPCC594.06c |||SNARE Vam7 |Schizosaccharomyces pombe|chr 3|||Manual    23   6.3  
SPBC14C8.07c |cdc18||MCM loader|Schizosaccharomyces pombe|chr 2|...    23   8.3  
SPBC16D10.05 |mok13||alpha-1,3-glucan synthase Mok13|Schizosacch...    23   8.3  
SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomy...    23   8.3  
SPAC9.10 |||amino acid permease, unknown 2|Schizosaccharomyces p...    23   8.3  

>SPAC6F12.05c |tnr3||thiamine diphosphokinase Tnr3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 569

 Score = 25.0 bits (52), Expect = 2.1
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +2

Query: 149 LRLWWPNGADPGMNTWQSVLFTALAGG 229
           LR+W P  + P   TW + L  ++AGG
Sbjct: 151 LRIWVPRRS-PTKQTWPNYLDNSVAGG 176


>SPBC3E7.05c |||conserved eukaryotic protein|Schizosaccharomyces
          pombe|chr 2|||Manual
          Length = 550

 Score = 25.0 bits (52), Expect = 2.1
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +2

Query: 29 TLQALTTAVLNNSTSPCPFVRQP 97
          +L+AL   V  N T P PFV +P
Sbjct: 28 SLRALPPDVKQNKTEPIPFVPKP 50


>SPAC17C9.12 |||MSP domain|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 319

 Score = 24.6 bits (51), Expect = 2.7
 Identities = 15/56 (26%), Positives = 26/56 (46%)
 Frame = -3

Query: 270 GVTGASWETTRALAPPARAVNSTDCHVFMPGSAPLGHHKRKFVRTAADEAVEVTIA 103
           G+ G +  +T A  P A    +T  H  +P ++ + H K     + A +A   T+A
Sbjct: 167 GIDGTALPSTHA-NPVAAPSTATTQHTQLPKTSAVSHQKPHEAPSTAVKAPTATVA 221


>SPAC7D4.03c |||conserved fungal family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 886

 Score = 24.2 bits (50), Expect = 3.6
 Identities = 11/29 (37%), Positives = 20/29 (68%)
 Frame = +2

Query: 23  DGTLQALTTAVLNNSTSPCPFVRQPWGAI 109
           DGT+QAL T V++ S S    +++ +G++
Sbjct: 698 DGTIQALVTDVVSISNSFSSGLKKAFGSL 726


>SPAC1142.08 |fhl1|SPAC8C9.01|fork head transcription factor Fhl1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 743

 Score = 23.4 bits (48), Expect = 6.3
 Identities = 9/29 (31%), Positives = 16/29 (55%)
 Frame = +1

Query: 19  PGWHTSGAYHCSIKQLDIALPIREATLGR 105
           P WH S  ++ S+ +  I +P R+   G+
Sbjct: 333 PAWHNSIRHNLSLNKAFIRIPRRQNEPGK 361


>SPCC594.06c |||SNARE Vam7 |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 341

 Score = 23.4 bits (48), Expect = 6.3
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +1

Query: 184 HEHVAVGAVHRSSWWCQRSCRLPGRSCYSS 273
           +E VA+ A  R + +  R C+LP +S  SS
Sbjct: 42  NEFVALDAQIRPNDYNSRLCKLPSKSWVSS 71


>SPBC14C8.07c |cdc18||MCM loader|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 577

 Score = 23.0 bits (47), Expect = 8.3
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +2

Query: 20  PDGTLQALTTAVLNNSTSPCPF 85
           P  T+Q +T   LN + +P PF
Sbjct: 105 PKRTIQIVTPKSLNRTCNPVPF 126


>SPBC16D10.05 |mok13||alpha-1,3-glucan synthase
           Mok13|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2358

 Score = 23.0 bits (47), Expect = 8.3
 Identities = 7/9 (77%), Positives = 8/9 (88%)
 Frame = +2

Query: 80  PFVRQPWGA 106
           PF+ QPWGA
Sbjct: 127 PFLNQPWGA 135


>SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1142

 Score = 23.0 bits (47), Expect = 8.3
 Identities = 10/24 (41%), Positives = 18/24 (75%), Gaps = 1/24 (4%)
 Frame = +1

Query: 49   CSIKQLDIALPIRE-ATLGRNRHF 117
            CS K++D+AL + E AT+ ++ +F
Sbjct: 1001 CSFKEVDLALELLERATITKDVYF 1024


>SPAC9.10 |||amino acid permease, unknown 2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 591

 Score = 23.0 bits (47), Expect = 8.3
 Identities = 13/24 (54%), Positives = 14/24 (58%)
 Frame = +2

Query: 17  CPDGTLQALTTAVLNNSTSPCPFV 88
           CPD  L   T A+L N  SP PFV
Sbjct: 364 CPD--LDTFT-AILYNDNSPQPFV 384


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,221,906
Number of Sequences: 5004
Number of extensions: 20988
Number of successful extensions: 53
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 53
length of database: 2,362,478
effective HSP length: 62
effective length of database: 2,052,230
effective search space used: 63619130
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)