Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_N22
(281 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_04_0035 + 17378541-17381276 31 0.18
02_05_0251 - 27155905-27156127,27156228-27156697 30 0.32
02_03_0093 - 15120951-15121344,15121658-15121953,15122119-151224... 28 0.97
02_02_0086 - 6647510-6648877 28 0.97
01_01_0492 - 3632812-3633189,3633563-3633709,3633906-3633995,363... 28 1.3
01_07_0008 + 40389744-40389896,40389967-40390048,40390693-403908... 27 1.7
03_01_0245 + 1916718-1917443,1917534-1917719 27 3.0
09_04_0381 + 17128437-17128655,17129250-17129331,17129409-171295... 26 3.9
12_01_0729 - 6468767-6468798,6468880-6469360 26 5.2
06_03_0017 - 15465831-15466043,15466091-15466249,15466664-154669... 26 5.2
05_01_0126 + 858259-858489,858641-859189,859545-860162 26 5.2
01_06_0065 + 26107522-26107700,26110875-26111253 26 5.2
11_03_0028 - 9080650-9080667,9080701-9080794,9082099-9082185,908... 25 6.8
11_01_0420 - 3230936-3231710,3232265-3233885,3234411-3234834 25 6.8
10_01_0177 - 2011514-2011529,2011776-2011861,2012044-2012124 25 6.8
07_03_1234 + 25064187-25064900 25 6.8
05_07_0339 - 29375424-29377166,29377272-29377441,29377888-293780... 25 6.8
05_03_0481 + 14556223-14556762,14556848-14556928,14559532-145597... 25 6.8
05_01_0522 - 4506667-4507254,4507474-4507824,4507967-4508163,450... 25 6.8
01_05_0379 + 21630223-21631188 25 6.8
06_03_0710 + 23792138-23792293,23792974-23793257,23794344-237944... 25 9.0
04_03_0530 + 16814164-16814493 25 9.0
03_06_0629 + 35187318-35187320,35187424-35187534,35188089-351881... 25 9.0
03_01_0470 + 3619417-3619572,3619681-3619759,3620017-3620258,362... 25 9.0
02_05_0282 - 27454714-27455814 25 9.0
02_02_0479 - 10775382-10775656,10776513-10777535,10777725-107784... 25 9.0
>05_04_0035 + 17378541-17381276
Length = 911
Score = 30.7 bits (66), Expect = 0.18
Identities = 16/42 (38%), Positives = 25/42 (59%)
Frame = -3
Query: 246 TTRALAPPARAVNSTDCHVFMPGSAPLGHHKRKFVRTAADEA 121
++ + A PA A ++T H +P APL H R F ++A+EA
Sbjct: 25 SSSSTASPAAAASAT--HHLLPPHAPLAPHARGFAFSSAEEA 64
>02_05_0251 - 27155905-27156127,27156228-27156697
Length = 230
Score = 29.9 bits (64), Expect = 0.32
Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = +1
Query: 82 IREATLGRNRHFNCFVSRRSDEFAFV-VAQWRGPRHEHVAVGAVHR 216
+ A+L R+ F CF R+SD +FV A+ G R E G V R
Sbjct: 38 LSSASLVRSPQFRCFCRRKSDPVSFVAAARALGGRAEAALRGYVRR 83
>02_03_0093 -
15120951-15121344,15121658-15121953,15122119-15122419,
15123233-15123628,15123883-15124067
Length = 523
Score = 28.3 bits (60), Expect = 0.97
Identities = 16/64 (25%), Positives = 30/64 (46%)
Frame = -3
Query: 258 ASWETTRALAPPARAVNSTDCHVFMPGSAPLGHHKRKFVRTAADEAVEVTIAPQGCLTNG 79
+ W R +A R ++ H+F +P H R++AD ++E AP+ L++
Sbjct: 184 SKWSHPRRIACMRRRLS----HLFKGSGSPSSRHDESSTRSSADASMEDADAPRQLLSDA 239
Query: 78 QGDV 67
D+
Sbjct: 240 DLDL 243
>02_02_0086 - 6647510-6648877
Length = 455
Score = 28.3 bits (60), Expect = 0.97
Identities = 19/53 (35%), Positives = 25/53 (47%)
Frame = -3
Query: 264 TGASWETTRALAPPARAVNSTDCHVFMPGSAPLGHHKRKFVRTAADEAVEVTI 106
T W+ +A + A T H+ APL H + VR AA EA+ VTI
Sbjct: 234 TTDGWKKKKAASSSPTAWRDTAAHL-----APLLHSDSRAVRMAAGEALAVTI 281
>01_01_0492 -
3632812-3633189,3633563-3633709,3633906-3633995,
3634278-3634331,3636434-3636598,3637252-3637488,
3637610-3637696,3637846-3638022
Length = 444
Score = 27.9 bits (59), Expect = 1.3
Identities = 13/27 (48%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Frame = +2
Query: 158 WWPN-GADPGMNTWQSVLFTALAGGAN 235
WW G+ P + W S LFT L G AN
Sbjct: 326 WWLQLGSGPLVGYWPSSLFTHLGGHAN 352
>01_07_0008 +
40389744-40389896,40389967-40390048,40390693-40390808,
40391107-40391195,40391859-40391904,40392248-40392716,
40392825-40392952,40393182-40393253,40393512-40393885,
40394005-40394545,40394653-40394952,40395167-40395268
Length = 823
Score = 27.5 bits (58), Expect = 1.7
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = +1
Query: 7 GSTLPGWHTSGAYHCSIKQLDIALPIREATLG 102
GS LPG +G CS +L + L R LG
Sbjct: 33 GSVLPGSELTGRARCSTSKLSLVLSNRAGGLG 64
>03_01_0245 + 1916718-1917443,1917534-1917719
Length = 303
Score = 26.6 bits (56), Expect = 3.0
Identities = 17/48 (35%), Positives = 29/48 (60%)
Frame = -3
Query: 180 GSAPLGHHKRKFVRTAADEAVEVTIAPQGCLTNGQGDVELFNTAVVSA 37
G+A LG +R+++R+ + T G + NG GDV+++NT +V A
Sbjct: 154 GNAKLGR-RRRWLRSTG-QTPRRTARAGGDVGNG-GDVKVYNTGLVEA 198
>09_04_0381 +
17128437-17128655,17129250-17129331,17129409-17129564,
17129646-17130431,17130743-17131094,17131467-17131548,
17131756-17131833,17132041-17132055
Length = 589
Score = 26.2 bits (55), Expect = 3.9
Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 7/54 (12%)
Frame = -3
Query: 153 RKFVRTAADEAVEVTIAPQGCLTNGQGDVELFN-------TAVVSA*SVPSGQS 13
R RTA +EA + I + CL NG +N TA+ S+ S+PS Q+
Sbjct: 359 RYMSRTAGEEA-SIGIGGKSCLANGGSHATQYNRVRRRLDTAIESSPSLPSTQA 411
>12_01_0729 - 6468767-6468798,6468880-6469360
Length = 170
Score = 25.8 bits (54), Expect = 5.2
Identities = 15/42 (35%), Positives = 20/42 (47%)
Frame = +3
Query: 93 NPGAQSSLQLLRQPPF*RICVCGGPMARTPA*TRGSRCCSPL 218
NP AQ+ L RQ ++ PMA +R S CC P+
Sbjct: 21 NPRAQNRLPTTRQV-ITKVDASSRPMAPRNVVSRWSNCCEPV 61
>06_03_0017 -
15465831-15466043,15466091-15466249,15466664-15466968,
15467083-15467324,15467818-15467825,15467954-15468418,
15468465-15468763,15468968-15469204,15469297-15469519
Length = 716
Score = 25.8 bits (54), Expect = 5.2
Identities = 12/42 (28%), Positives = 22/42 (52%)
Frame = -3
Query: 192 VFMPGSAPLGHHKRKFVRTAADEAVEVTIAPQGCLTNGQGDV 67
+F +P HH R++AD ++E AP+ L++ D+
Sbjct: 419 LFKGSGSPSSHHGESSTRSSADVSMEDADAPRQLLSDTDLDL 460
>05_01_0126 + 858259-858489,858641-859189,859545-860162
Length = 465
Score = 25.8 bits (54), Expect = 5.2
Identities = 17/55 (30%), Positives = 22/55 (40%)
Frame = -3
Query: 270 GVTGASWETTRALAPPARAVNSTDCHVFMPGSAPLGHHKRKFVRTAADEAVEVTI 106
G SW + P A V ++ S G R FVRT+ DEA V +
Sbjct: 142 GAREISWRVALFIDPNAAGVLPLPDGPYLVHSTRRGGRWRVFVRTSPDEASGVRV 196
>01_06_0065 + 26107522-26107700,26110875-26111253
Length = 185
Score = 25.8 bits (54), Expect = 5.2
Identities = 19/67 (28%), Positives = 28/67 (41%), Gaps = 1/67 (1%)
Frame = +1
Query: 58 KQLDIALP-IREATLGRNRHFNCFVSRRSDEFAFVVAQWRGPRHEHVAVGAVHRSSWWCQ 234
K+ DI L +R + R F + RR V A+ E A+ RS+WW
Sbjct: 62 KRGDIVLAALRRSARRGTRRFVLMLFRRQ---RLVAAEKEADEEEEDIGTALRRSAWWAT 118
Query: 235 RSCRLPG 255
++ PG
Sbjct: 119 QTQATPG 125
>11_03_0028 -
9080650-9080667,9080701-9080794,9082099-9082185,
9082276-9082333,9083535-9083598,9083837-9083898,
9083976-9084027,9084410-9084530,9085369-9085463
Length = 216
Score = 25.4 bits (53), Expect = 6.8
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = +1
Query: 175 GPRHEHVAVGAVHRSSWWCQRSCRLPGRSCYSSQL 279
GPR + + + ++ R C CR G+SC S+L
Sbjct: 139 GPRLDGINI-SIGRRGESCSSVCRAKGQSCVPSRL 172
>11_01_0420 - 3230936-3231710,3232265-3233885,3234411-3234834
Length = 939
Score = 25.4 bits (53), Expect = 6.8
Identities = 13/31 (41%), Positives = 15/31 (48%), Gaps = 3/31 (9%)
Frame = +1
Query: 169 WRGPRHEHVAVG---AVHRSSWWCQRSCRLP 252
WRG + G AV S WW +SC LP
Sbjct: 41 WRGQLRQGEGEGRSRAVKVSVWWDFQSCHLP 71
>10_01_0177 - 2011514-2011529,2011776-2011861,2012044-2012124
Length = 60
Score = 25.4 bits (53), Expect = 6.8
Identities = 13/40 (32%), Positives = 20/40 (50%)
Frame = -1
Query: 260 ERPGRRHERWHHQLER*TAPTATCSCRGPRHWATTNANSS 141
ER RR RW +ER T+P +C AT + +++
Sbjct: 12 ERSRRRRWRWTVAVERVTSPMTGANCGAVTGEATCDGSNT 51
>07_03_1234 + 25064187-25064900
Length = 237
Score = 25.4 bits (53), Expect = 6.8
Identities = 12/35 (34%), Positives = 16/35 (45%)
Frame = -3
Query: 108 IAPQGCLTNGQGDVELFNTAVVSA*SVPSGQSRAS 4
+ P G GQGD + A A + G SRA+
Sbjct: 165 VCPSGAANAGQGDTSRSHNAGAGAAAATPGSSRAT 199
>05_07_0339 -
29375424-29377166,29377272-29377441,29377888-29378030,
29378363-29378478,29378576-29378814,29378909-29379110,
29379212-29379430,29379657-29379724,29379806-29379812,
29380404-29380616
Length = 1039
Score = 25.4 bits (53), Expect = 6.8
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = -3
Query: 210 NSTDCHVFMPGSAPLGHHKRKFVRTAADEAVEVTIAPQ 97
N+T CH+ + G + + +R A +V VTI P+
Sbjct: 164 NATYCHLSVYGPGRVDPSSLQVLRPALQYSVHVTIPPE 201
>05_03_0481 +
14556223-14556762,14556848-14556928,14559532-14559798,
14559933-14559992,14560811-14560942,14561026-14561199,
14562769-14562919,14563651-14563790,14565656-14565787,
14565866-14566000,14566098-14566304,14567376-14567540
Length = 727
Score = 25.4 bits (53), Expect = 6.8
Identities = 13/33 (39%), Positives = 14/33 (42%)
Frame = -3
Query: 189 FMPGSAPLGHHKRKFVRTAADEAVEVTIAPQGC 91
F G LGH + AD E IA QGC
Sbjct: 150 FSSGLIKLGHQRDSRAAIFADTRTEWIIAAQGC 182
>05_01_0522 -
4506667-4507254,4507474-4507824,4507967-4508163,
4508324-4508582,4508656-4508868,4508946-4509071,
4509159-4509296,4509376-4509721,4509822-4510088,
4510427-4510616,4510700-4510784,4510885-4511072,
4511262-4511457,4512027-4512113
Length = 1076
Score = 25.4 bits (53), Expect = 6.8
Identities = 16/54 (29%), Positives = 25/54 (46%)
Frame = -2
Query: 250 GDDTSVGTTS*SGEQHRLPRVHAGVRAIGPPQTQIRQNGG*RSS*SDDCAPGLP 89
G+D + ++S EQHR+PR+ +G + G RS S P +P
Sbjct: 133 GEDVDLSSSS-RHEQHRIPRLTSGQQISGEIPDASPDRHSIRSGTSSYVDPSVP 185
>01_05_0379 + 21630223-21631188
Length = 321
Score = 25.4 bits (53), Expect = 6.8
Identities = 17/60 (28%), Positives = 26/60 (43%)
Frame = +1
Query: 88 EATLGRNRHFNCFVSRRSDEFAFVVAQWRGPRHEHVAVGAVHRSSWWCQRSCRLPGRSCY 267
EA + H++ + R A VV R HVA+G R + W +++ SCY
Sbjct: 230 EAEAAKENHYS-YSKRGKRPAAEVVKGLSMERMAHVALGPEMRLAPWPEKAADADWGSCY 288
>06_03_0710 +
23792138-23792293,23792974-23793257,23794344-23794499,
23795318-23795804,23795864-23796181,23796773-23797165,
23797752-23798021
Length = 687
Score = 25.0 bits (52), Expect = 9.0
Identities = 13/41 (31%), Positives = 20/41 (48%)
Frame = +2
Query: 149 LRLWWPNGADPGMNTWQSVLFTALAGGANARVVSQDAPVTP 271
L L P+G+ G T +L L+GG ++ D P +P
Sbjct: 104 LALMGPSGS--GKTTLLKILGGRLSGGVKGQITYNDTPYSP 142
>04_03_0530 + 16814164-16814493
Length = 109
Score = 25.0 bits (52), Expect = 9.0
Identities = 12/37 (32%), Positives = 16/37 (43%)
Frame = +1
Query: 130 SRRSDEFAFVVAQWRGPRHEHVAVGAVHRSSWWCQRS 240
SRR +A+ G E + V + SWWC S
Sbjct: 16 SRRPTNRVVKLAKRSGLLSERIFVSPLAYESWWCSSS 52
>03_06_0629 +
35187318-35187320,35187424-35187534,35188089-35188191,
35188357-35188416,35188502-35188661,35188755-35188872
Length = 184
Score = 25.0 bits (52), Expect = 9.0
Identities = 10/28 (35%), Positives = 15/28 (53%)
Frame = +2
Query: 14 LCPDGTLQALTTAVLNNSTSPCPFVRQP 97
+ PD T++ + LN P P+ RQP
Sbjct: 130 VAPDWTIETGNSVTLNRWPVPLPYWRQP 157
>03_01_0470 +
3619417-3619572,3619681-3619759,3620017-3620258,
3620804-3621148,3623592-3624116
Length = 448
Score = 25.0 bits (52), Expect = 9.0
Identities = 18/51 (35%), Positives = 22/51 (43%)
Frame = -3
Query: 243 TRALAPPARAVNSTDCHVFMPGSAPLGHHKRKFVRTAADEAVEVTIAPQGC 91
TR APP+ C PG AP G H V ++A +E A GC
Sbjct: 136 TRTAAPPSH------CR---PGPAPSGAHPSLAVASSAQYIIEQFRATTGC 177
>02_05_0282 - 27454714-27455814
Length = 366
Score = 25.0 bits (52), Expect = 9.0
Identities = 13/38 (34%), Positives = 17/38 (44%)
Frame = -3
Query: 276 LAGVTGASWETTRALAPPARAVNSTDCHVFMPGSAPLG 163
LA GA + + ST C+V +P APLG
Sbjct: 196 LAAANGAGGRGSVGAFSAMELLRSTGCYVPLPQMAPLG 233
>02_02_0479 -
10775382-10775656,10776513-10777535,10777725-10778461,
10779008-10779155,10779331-10779856
Length = 902
Score = 25.0 bits (52), Expect = 9.0
Identities = 15/36 (41%), Positives = 24/36 (66%), Gaps = 4/36 (11%)
Frame = +1
Query: 10 STLPGWHTSGAYHCSIKQLDIAL-PIREA---TLGR 105
S+LP W T+ ++ +++ L IA+ IR+A TLGR
Sbjct: 646 SSLPAWMTNPSHVPNLRSLSIAVREIRQADVETLGR 681
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,614,074
Number of Sequences: 37544
Number of extensions: 199581
Number of successful extensions: 599
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 592
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 599
length of database: 14,793,348
effective HSP length: 70
effective length of database: 12,165,268
effective search space used: 279801164
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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