Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_N22
(281 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U41026-1|AAM51522.2| 101|Caenorhabditis elegans Hypothetical pr... 28 1.2
Z68114-4|CAA92159.1| 324|Caenorhabditis elegans Hypothetical pr... 27 2.7
U70852-14|AAM98014.1| 783|Caenorhabditis elegans Gei-4(four) in... 26 3.6
U70852-13|AAM98015.1| 788|Caenorhabditis elegans Gei-4(four) in... 26 3.6
U00048-7|AAB53831.2| 752|Caenorhabditis elegans Hypothetical pr... 26 4.8
AY077615-1|AAL79359.1| 510|Caenorhabditis elegans KSR-2b protein. 25 6.3
AY077614-1|AAL79358.1| 550|Caenorhabditis elegans KSR-2a protein. 25 6.3
AL137227-5|CAB70240.2| 510|Caenorhabditis elegans Hypothetical ... 25 6.3
AL137227-4|CAB70239.2| 550|Caenorhabditis elegans Hypothetical ... 25 6.3
Z68108-14|CAA92133.3| 2066|Caenorhabditis elegans Hypothetical p... 25 8.4
Z68108-11|CAF31491.1| 2134|Caenorhabditis elegans Hypothetical p... 25 8.4
Z68108-7|CAF31487.1| 1692|Caenorhabditis elegans Hypothetical pr... 25 8.4
Z54327-1|CAA91119.1| 569|Caenorhabditis elegans Hypothetical pr... 25 8.4
AY390540-1|AAQ94952.1| 405|Caenorhabditis elegans SMA-9 class I... 25 8.4
AY390539-1|AAQ94951.1| 465|Caenorhabditis elegans SMA-9 class I... 25 8.4
AY390538-1|AAQ94950.1| 591|Caenorhabditis elegans SMA-9 class I... 25 8.4
>U41026-1|AAM51522.2| 101|Caenorhabditis elegans Hypothetical
protein C28G1.5 protein.
Length = 101
Score = 27.9 bits (59), Expect = 1.2
Identities = 12/27 (44%), Positives = 14/27 (51%)
Frame = +2
Query: 11 LLCPDGTLQALTTAVLNNSTSPCPFVR 91
L C TA++NNST CPF R
Sbjct: 25 LTCGHALCHKCITAMVNNSTVECPFCR 51
>Z68114-4|CAA92159.1| 324|Caenorhabditis elegans Hypothetical
protein F17A2.6 protein.
Length = 324
Score = 26.6 bits (56), Expect = 2.7
Identities = 11/34 (32%), Positives = 16/34 (47%)
Frame = +1
Query: 28 HTSGAYHCSIKQLDIALPIREATLGRNRHFNCFV 129
H S Y +Q+ +P+ + G RHF FV
Sbjct: 58 HVSACYLMQFRQVSNLVPMEVWSYGYGRHFEAFV 91
>U70852-14|AAM98014.1| 783|Caenorhabditis elegans Gei-4(four)
interacting proteinprotein 4, isoform a protein.
Length = 783
Score = 26.2 bits (55), Expect = 3.6
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = +2
Query: 17 CPDGTLQALTTAVLNNSTSPCPFVR 91
CPDG + T VL + CPFV+
Sbjct: 182 CPDGYFEPDTGQVLTMNVYRCPFVQ 206
>U70852-13|AAM98015.1| 788|Caenorhabditis elegans Gei-4(four)
interacting proteinprotein 4, isoform b protein.
Length = 788
Score = 26.2 bits (55), Expect = 3.6
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = +2
Query: 17 CPDGTLQALTTAVLNNSTSPCPFVR 91
CPDG + T VL + CPFV+
Sbjct: 187 CPDGYFEPDTGQVLTMNVYRCPFVQ 211
>U00048-7|AAB53831.2| 752|Caenorhabditis elegans Hypothetical
protein C05D11.9 protein.
Length = 752
Score = 25.8 bits (54), Expect = 4.8
Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Frame = -3
Query: 201 DCH-VFMPGSAPLGH-HKRKFVRTAADEAVEVTIAPQGCLTNGQGDVELFN 55
+CH ++MPG P G+ +F R + D+ V + I P L + +E +N
Sbjct: 188 ECHQLYMPGKYPFGYIGPARFQRLSGDK-VHIWIHPSSKLQFMKALLEYYN 237
>AY077615-1|AAL79359.1| 510|Caenorhabditis elegans KSR-2b protein.
Length = 510
Score = 25.4 bits (53), Expect = 6.3
Identities = 10/24 (41%), Positives = 18/24 (75%), Gaps = 1/24 (4%)
Frame = +1
Query: 133 RRSDEFAF-VVAQWRGPRHEHVAV 201
RR+D FA +V+ ++ RH+H+A+
Sbjct: 246 RRADVFATEIVSAYKNSRHDHIAL 269
>AY077614-1|AAL79358.1| 550|Caenorhabditis elegans KSR-2a protein.
Length = 550
Score = 25.4 bits (53), Expect = 6.3
Identities = 10/24 (41%), Positives = 18/24 (75%), Gaps = 1/24 (4%)
Frame = +1
Query: 133 RRSDEFAF-VVAQWRGPRHEHVAV 201
RR+D FA +V+ ++ RH+H+A+
Sbjct: 286 RRADVFATEIVSAYKNSRHDHIAL 309
>AL137227-5|CAB70240.2| 510|Caenorhabditis elegans Hypothetical
protein F58D5.4b protein.
Length = 510
Score = 25.4 bits (53), Expect = 6.3
Identities = 10/24 (41%), Positives = 18/24 (75%), Gaps = 1/24 (4%)
Frame = +1
Query: 133 RRSDEFAF-VVAQWRGPRHEHVAV 201
RR+D FA +V+ ++ RH+H+A+
Sbjct: 246 RRADVFATEIVSAYKNSRHDHIAL 269
>AL137227-4|CAB70239.2| 550|Caenorhabditis elegans Hypothetical
protein F58D5.4a protein.
Length = 550
Score = 25.4 bits (53), Expect = 6.3
Identities = 10/24 (41%), Positives = 18/24 (75%), Gaps = 1/24 (4%)
Frame = +1
Query: 133 RRSDEFAF-VVAQWRGPRHEHVAV 201
RR+D FA +V+ ++ RH+H+A+
Sbjct: 286 RRADVFATEIVSAYKNSRHDHIAL 309
>Z68108-14|CAA92133.3| 2066|Caenorhabditis elegans Hypothetical
protein T05A10.1a protein.
Length = 2066
Score = 25.0 bits (52), Expect = 8.4
Identities = 15/50 (30%), Positives = 22/50 (44%)
Frame = -3
Query: 150 KFVRTAADEAVEVTIAPQGCLTNGQGDVELFNTAVVSA*SVPSGQSRASC 1
+ +R A+ VT + + Q V + +T VSA S QS SC
Sbjct: 1716 EMIRALANAQTPVTASMTNTPSTAQFPVGVVSTPSVSAVSASGSQSNVSC 1765
>Z68108-11|CAF31491.1| 2134|Caenorhabditis elegans Hypothetical
protein T05A10.1d protein.
Length = 2134
Score = 25.0 bits (52), Expect = 8.4
Identities = 15/50 (30%), Positives = 22/50 (44%)
Frame = -3
Query: 150 KFVRTAADEAVEVTIAPQGCLTNGQGDVELFNTAVVSA*SVPSGQSRASC 1
+ +R A+ VT + + Q V + +T VSA S QS SC
Sbjct: 1784 EMIRALANAQTPVTASMTNTPSTAQFPVGVVSTPSVSAVSASGSQSNVSC 1833
>Z68108-7|CAF31487.1| 1692|Caenorhabditis elegans Hypothetical protein
T05A10.1c protein.
Length = 1692
Score = 25.0 bits (52), Expect = 8.4
Identities = 15/50 (30%), Positives = 22/50 (44%)
Frame = -3
Query: 150 KFVRTAADEAVEVTIAPQGCLTNGQGDVELFNTAVVSA*SVPSGQSRASC 1
+ +R A+ VT + + Q V + +T VSA S QS SC
Sbjct: 1342 EMIRALANAQTPVTASMTNTPSTAQFPVGVVSTPSVSAVSASGSQSNVSC 1391
>Z54327-1|CAA91119.1| 569|Caenorhabditis elegans Hypothetical
protein C26D10.1 protein.
Length = 569
Score = 25.0 bits (52), Expect = 8.4
Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Frame = -3
Query: 156 KRKFVRTAADEAVEVTIAPQGC-LTNGQGDV 67
KRK V+ AA E V + +GC LT G G++
Sbjct: 299 KRKIVKIAAGENHLVMLDEKGCLLTFGDGEM 329
>AY390540-1|AAQ94952.1| 405|Caenorhabditis elegans SMA-9 class Ia
protein.
Length = 405
Score = 25.0 bits (52), Expect = 8.4
Identities = 15/50 (30%), Positives = 22/50 (44%)
Frame = -3
Query: 150 KFVRTAADEAVEVTIAPQGCLTNGQGDVELFNTAVVSA*SVPSGQSRASC 1
+ +R A+ VT + + Q V + +T VSA S QS SC
Sbjct: 55 EMIRALANAQTPVTASMTNTPSTAQFPVGVVSTPSVSAVSASGSQSNVSC 104
>AY390539-1|AAQ94951.1| 465|Caenorhabditis elegans SMA-9 class Ia
protein.
Length = 465
Score = 25.0 bits (52), Expect = 8.4
Identities = 15/50 (30%), Positives = 22/50 (44%)
Frame = -3
Query: 150 KFVRTAADEAVEVTIAPQGCLTNGQGDVELFNTAVVSA*SVPSGQSRASC 1
+ +R A+ VT + + Q V + +T VSA S QS SC
Sbjct: 115 EMIRALANAQTPVTASMTNTPSTAQFPVGVVSTPSVSAVSASGSQSNVSC 164
>AY390538-1|AAQ94950.1| 591|Caenorhabditis elegans SMA-9 class Ia
protein.
Length = 591
Score = 25.0 bits (52), Expect = 8.4
Identities = 15/50 (30%), Positives = 22/50 (44%)
Frame = -3
Query: 150 KFVRTAADEAVEVTIAPQGCLTNGQGDVELFNTAVVSA*SVPSGQSRASC 1
+ +R A+ VT + + Q V + +T VSA S QS SC
Sbjct: 241 EMIRALANAQTPVTASMTNTPSTAQFPVGVVSTPSVSAVSASGSQSNVSC 290
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,315,489
Number of Sequences: 27780
Number of extensions: 141780
Number of successful extensions: 373
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 365
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 373
length of database: 12,740,198
effective HSP length: 69
effective length of database: 10,823,378
effective search space used: 259761072
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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