Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_N22
         (281 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        23   0.54 
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        23   0.54 
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        23   0.54 
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    22   1.7  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     20   5.0  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    20   6.7  

>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 23.4 bits (48), Expect = 0.54
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = +2

Query: 17  CPDGTLQALTTAVLNNSTSPCPFVRQPW 100
           CPDG+        ++ +T PC +  +PW
Sbjct: 286 CPDGS-----KVPIDANTKPCTWAARPW 308



 Score = 19.8 bits (39), Expect = 6.7
 Identities = 10/31 (32%), Positives = 13/31 (41%)
 Frame = -3

Query: 93  CLTNGQGDVELFNTAVVSA*SVPSGQSRASC 1
           CL +G+GDV       +S   V S      C
Sbjct: 582 CLLDGKGDVAFVPLTALSEEGVQSKDLALIC 612



 Score = 19.4 bits (38), Expect = 8.8
 Identities = 6/7 (85%), Positives = 7/7 (100%)
 Frame = +2

Query: 8   ALLCPDG 28
           AL+CPDG
Sbjct: 609 ALICPDG 615


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 23.4 bits (48), Expect = 0.54
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = +2

Query: 17  CPDGTLQALTTAVLNNSTSPCPFVRQPW 100
           CPDG+        ++ +T PC +  +PW
Sbjct: 286 CPDGS-----KVPIDANTKPCTWAARPW 308



 Score = 19.8 bits (39), Expect = 6.7
 Identities = 10/31 (32%), Positives = 13/31 (41%)
 Frame = -3

Query: 93  CLTNGQGDVELFNTAVVSA*SVPSGQSRASC 1
           CL +G+GDV       +S   V S      C
Sbjct: 582 CLLDGKGDVAFVPLTALSEEGVQSKDLALIC 612



 Score = 19.4 bits (38), Expect = 8.8
 Identities = 6/7 (85%), Positives = 7/7 (100%)
 Frame = +2

Query: 8   ALLCPDG 28
           AL+CPDG
Sbjct: 609 ALICPDG 615


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 23.4 bits (48), Expect = 0.54
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = +2

Query: 17  CPDGTLQALTTAVLNNSTSPCPFVRQPW 100
           CPDG+        ++ +T PC +  +PW
Sbjct: 286 CPDGS-----KVPIDANTKPCTWAARPW 308



 Score = 19.8 bits (39), Expect = 6.7
 Identities = 10/31 (32%), Positives = 13/31 (41%)
 Frame = -3

Query: 93  CLTNGQGDVELFNTAVVSA*SVPSGQSRASC 1
           CL +G+GDV       +S   V S      C
Sbjct: 582 CLLDGKGDVAFVPLTALSEEGVQSKDLALIC 612



 Score = 19.4 bits (38), Expect = 8.8
 Identities = 6/7 (85%), Positives = 7/7 (100%)
 Frame = +2

Query: 8   ALLCPDG 28
           AL+CPDG
Sbjct: 609 ALICPDG 615


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 21.8 bits (44), Expect = 1.7
 Identities = 13/41 (31%), Positives = 19/41 (46%), Gaps = 3/41 (7%)
 Frame = -1

Query: 257 RPGRRHERWHHQLER*TAPTATCS---CRGPRHWATTNANS 144
           RP +   RW  ++   T PT+T S      P+H  T+   S
Sbjct: 350 RPKKTRLRWMMEIPNVTLPTSTYSGSPTELPKHLPTSLTKS 390


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 20.2 bits (40), Expect = 5.0
 Identities = 9/23 (39%), Positives = 11/23 (47%)
 Frame = +2

Query: 38  ALTTAVLNNSTSPCPFVRQPWGA 106
           +L   +   ST  C FV  PW A
Sbjct: 38  SLREGLAGASTFRCVFVLDPWFA 60


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 19.8 bits (39), Expect = 6.7
 Identities = 6/12 (50%), Positives = 10/12 (83%)
 Frame = +1

Query: 64  LDIALPIREATL 99
           LD+A+P+RE  +
Sbjct: 452 LDLAIPVRETLI 463


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 84,299
Number of Sequences: 438
Number of extensions: 1537
Number of successful extensions: 12
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 49
effective length of database: 124,881
effective search space used:  5494764
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)