Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_N20
         (453 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC11E3.02c |||C2 domain protein|Schizosaccharomyces pombe|chr ...    26   2.3  
SPAC18B11.03c |||N-acetyltransferase |Schizosaccharomyces pombe|...    26   2.3  
SPAC23H4.05c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual       25   5.4  
SPAPB24D3.01 ||SPAPB2C8.02|transcription factor |Schizosaccharom...    25   7.2  
SPCC18.04 |pof6||F-box protein Pof6|Schizosaccharomyces pombe|ch...    25   7.2  
SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyce...    25   7.2  
SPCC1322.07c |mug150||sequence orphan|Schizosaccharomyces pombe|...    24   9.5  
SPBC21D10.12 |hob1||BAR adaptor protein Hob1|Schizosaccharomyces...    24   9.5  

>SPAC11E3.02c |||C2 domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1237

 Score = 26.2 bits (55), Expect = 2.3
 Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 7/55 (12%)
 Frame = -3

Query: 217 IIFENE-KYPKLPS*SVLPFRILPRTNRQT------DRNCKSCIFGIVTYIN*FV 74
           +IF+ E    KLPS + L   I+  +NR +      +RNC  CI+G+++    F+
Sbjct: 506 VIFDEEFDLSKLPSSNFLD-EIILASNRISVRIKFLERNCSECIYGVLSLPQIFI 559


>SPAC18B11.03c |||N-acetyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 440

 Score = 26.2 bits (55), Expect = 2.3
 Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
 Frame = +3

Query: 105 KIQLLQFLSVCLFVLGSIRN--GRTDYDGNLGYFSFSKIITVPRKKIRF 245
           +I LL ++ +  ++L S     G T    NLGYFSF    +V  K + F
Sbjct: 332 QIGLLSYIDIEDYLLKSCEKTRGNTAEISNLGYFSFPADSSVKIKNMAF 380


>SPAC23H4.05c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 97

 Score = 25.0 bits (52), Expect = 5.4
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -1

Query: 438 FPRILC*LTSCVPVAAPAF 382
           FP + C LTS  P+ AP F
Sbjct: 16  FPSLACLLTSRTPLCAPLF 34


>SPAPB24D3.01 ||SPAPB2C8.02|transcription factor
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 594

 Score = 24.6 bits (51), Expect = 7.2
 Identities = 7/26 (26%), Positives = 18/26 (69%)
 Frame = -1

Query: 336 LTIILFFFVLR*SKNISHI*IFKHLP 259
           + ++ FFF++  +KN+ ++ +F + P
Sbjct: 486 INVLKFFFIIPIAKNVCYLWVFLYCP 511


>SPCC18.04 |pof6||F-box protein Pof6|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 872

 Score = 24.6 bits (51), Expect = 7.2
 Identities = 13/44 (29%), Positives = 22/44 (50%)
 Frame = +2

Query: 14  LQEFGTRRHEGDVKIYFFTKYKLIYIRYYTKNTTFTISVCLSVC 145
           ++E+  RRH+   K  F      IY++ +T  +T  +  C  VC
Sbjct: 14  IKEYLERRHKQQFKALFGCLTINIYLKIFTLISTPDLCNCRLVC 57


>SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1242

 Score = 24.6 bits (51), Expect = 7.2
 Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
 Frame = +1

Query: 70   KIQINL-YTLLYQKYNFYNFCLSVCLF-WVVS 159
            K++ N  YT+ Y   NFY   +++ LF W+ S
Sbjct: 941  KVEENADYTITYAPSNFYKRLIALLLFCWICS 972


>SPCC1322.07c |mug150||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 104

 Score = 24.2 bits (50), Expect = 9.5
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +1

Query: 49  RQNIFFYKIQINLYTLLYQKYNFYNFCLSVCL 144
           R+N+FF K  I L   LY  Y  +  C ++ L
Sbjct: 26  RKNMFFLKNIIVLSNYLYLLYKAWIVCTTISL 57


>SPBC21D10.12 |hob1||BAR adaptor protein Hob1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 466

 Score = 24.2 bits (50), Expect = 9.5
 Identities = 8/15 (53%), Positives = 13/15 (86%)
 Frame = +1

Query: 64  FYKIQINLYTLLYQK 108
           FY +Q+N+Y +LY+K
Sbjct: 223 FYYMQLNVYYVLYEK 237


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,907,617
Number of Sequences: 5004
Number of extensions: 37529
Number of successful extensions: 71
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 71
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 71
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 168258430
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)