Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_N20
         (453 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006815-2|AAL32261.1|  301|Caenorhabditis elegans Hypothetical ...    28   3.7  
L07144-6|AAK21443.1|  834|Caenorhabditis elegans Temporarily ass...    27   8.4  
L07144-5|AAU20841.1|  837|Caenorhabditis elegans Temporarily ass...    27   8.4  

>AC006815-2|AAL32261.1|  301|Caenorhabditis elegans Hypothetical
           protein Y6D11A.2 protein.
          Length = 301

 Score = 27.9 bits (59), Expect = 3.7
 Identities = 14/53 (26%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
 Frame = -3

Query: 169 LPFRILPR-TNRQTDRNCKSCIFGIVTYIN*FVFCKKIYFDVTLVPPRAEFLQ 14
           + F + PR TN++T  N    I     Y++  + C K+Y    +     +FL+
Sbjct: 225 ITFVLFPRHTNKKTKDNTIDLIHSFRDYLHYHIKCSKVYLHTRMRAKTTDFLK 277


>L07144-6|AAK21443.1|  834|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 84, isoform a protein.
          Length = 834

 Score = 26.6 bits (56), Expect = 8.4
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -2

Query: 149 QNKQTDRQKL*KLYFWYSNVYKLICIL*KNIF 54
           + +QTD     K+Y  +S++ K IC   KN F
Sbjct: 80  RRQQTDESNFLKVYNMFSDIEKYICTQTKNEF 111


>L07144-5|AAU20841.1|  837|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 84, isoform b protein.
          Length = 837

 Score = 26.6 bits (56), Expect = 8.4
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -2

Query: 149 QNKQTDRQKL*KLYFWYSNVYKLICIL*KNIF 54
           + +QTD     K+Y  +S++ K IC   KN F
Sbjct: 80  RRQQTDESNFLKVYNMFSDIEKYICTQTKNEF 111


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,693,998
Number of Sequences: 27780
Number of extensions: 212678
Number of successful extensions: 464
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 453
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 464
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 799252350
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)