Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_N19
         (399 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual      26   2.5  
SPBC30D10.10c |tor1||phosphatidylinositol kinase Tor1|Schizosacc...    25   5.7  
SPAC26A3.09c |rga2||GTPase activating protein Rga2|Schizosacchar...    24   10.0 

>SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1202

 Score = 25.8 bits (54), Expect = 2.5
 Identities = 10/35 (28%), Positives = 22/35 (62%)
 Frame = -1

Query: 108 LLQRYVTLQI*LSVQNIWRYIFQSDHLLSRRLGSS 4
           L +R+++L+    ++N+W  +F S H L + + S+
Sbjct: 404 LARRWISLE---EIENLWLKVFDSSHPLGKSITST 435


>SPBC30D10.10c |tor1||phosphatidylinositol kinase
            Tor1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2335

 Score = 24.6 bits (51), Expect = 5.7
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = +1

Query: 13   ETPRQQMIRLEYVTPNVLDA 72
            + PR + + L+YV+P +LDA
Sbjct: 1913 QLPRIKHLELQYVSPKLLDA 1932


>SPAC26A3.09c |rga2||GTPase activating protein
           Rga2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1275

 Score = 23.8 bits (49), Expect = 10.0
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -1

Query: 72  SVQNIWRYIFQSDHLLSRRL 13
           SV   +RYIFQ+D  L +R+
Sbjct: 675 SVDTYFRYIFQTDLKLEQRI 694


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,351,437
Number of Sequences: 5004
Number of extensions: 20600
Number of successful extensions: 43
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 43
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 134126124
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)