Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_N19
         (399 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL033514-10|CAE47472.1|  436|Caenorhabditis elegans Hypothetical...    27   6.5  
AL033514-9|CAA22098.1|  605|Caenorhabditis elegans Hypothetical ...    27   6.5  
AF016685-6|AAG24147.1|  338|Caenorhabditis elegans Seven tm rece...    26   8.7  

>AL033514-10|CAE47472.1|  436|Caenorhabditis elegans Hypothetical
           protein Y75B8A.9b protein.
          Length = 436

 Score = 26.6 bits (56), Expect = 6.5
 Identities = 21/64 (32%), Positives = 30/64 (46%)
 Frame = -1

Query: 198 EKQSTAXXXXXXXXCTGPQRAPFLPLGTDLLLQRYVTLQI*LSVQNIWRYIFQSDHLLSR 19
           EKQ+ A         T P R+  + + TDLL +     +  L V+   +Y F    LLS 
Sbjct: 76  EKQNIAAPPLPKSFTTFPDRSKEIEIDTDLLGKINGKAEDDLQVEGYKKYQFNG--LLSD 133

Query: 18  RLGS 7
           R+GS
Sbjct: 134 RIGS 137


>AL033514-9|CAA22098.1|  605|Caenorhabditis elegans Hypothetical
           protein Y75B8A.9a protein.
          Length = 605

 Score = 26.6 bits (56), Expect = 6.5
 Identities = 21/64 (32%), Positives = 30/64 (46%)
 Frame = -1

Query: 198 EKQSTAXXXXXXXXCTGPQRAPFLPLGTDLLLQRYVTLQI*LSVQNIWRYIFQSDHLLSR 19
           EKQ+ A         T P R+  + + TDLL +     +  L V+   +Y F    LLS 
Sbjct: 76  EKQNIAAPPLPKSFTTFPDRSKEIEIDTDLLGKINGKAEDDLQVEGYKKYQFNG--LLSD 133

Query: 18  RLGS 7
           R+GS
Sbjct: 134 RIGS 137


>AF016685-6|AAG24147.1|  338|Caenorhabditis elegans Seven tm
           receptor protein 84 protein.
          Length = 338

 Score = 26.2 bits (55), Expect = 8.7
 Identities = 26/75 (34%), Positives = 36/75 (48%), Gaps = 3/75 (4%)
 Frame = -1

Query: 261 IYNTIMNIGIRTAHTSKLNIKEKQSTAXXXXXXXXCTGPQRAPFLPLGTDLLLQ---RYV 91
           +YN ++ I   TA T+  N+    ST           GP R     LG  L+LQ    YV
Sbjct: 49  VYNVVL-IMYSTA-TTNANLAA-HSTETSYVLFRMYNGPDRT----LGPLLILQFCTMYV 101

Query: 90  TLQI*LSVQNIWRYI 46
           T+ I LSV  I+R++
Sbjct: 102 TMLIILSVHFIYRFV 116


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,626,165
Number of Sequences: 27780
Number of extensions: 122818
Number of successful extensions: 259
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 259
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 259
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 619699724
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)