Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_N18
         (286 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP8B7.04 |mug45||sequence orphan|Schizosaccharomyces pombe|chr...    27   0.40 
SPCC1183.04c |pet127||mitochondrial membrane protein Pet127|Schi...    26   1.2  
SPAC9E9.04 |||bcap family homolog|Schizosaccharomyces pombe|chr ...    25   1.6  
SPBC16D10.05 |mok13||alpha-1,3-glucan synthase Mok13|Schizosacch...    25   2.1  
SPAC1783.07c |pap1|caf3, caf3|transcription factor Caf3|Schizosa...    24   4.9  
SPCC663.03 |pmd1||leptomycin efflux transporter Pmd1|Schizosacch...    23   6.5  
SPCC162.09c |hmg1||3-hydroxy-3-methylglutaryl-CoA reductase|Schi...    23   8.5  

>SPBP8B7.04 |mug45||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 819

 Score = 27.5 bits (58), Expect = 0.40
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +1

Query: 49  DFYYLSINFMTFTRICALNLYI 114
           +FY   +NF TF   CA+N +I
Sbjct: 347 EFYETKLNFFTFPLECAINFHI 368


>SPCC1183.04c |pet127||mitochondrial membrane protein
           Pet127|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 524

 Score = 25.8 bits (54), Expect = 1.2
 Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 8/37 (21%)
 Frame = +1

Query: 31  SNWNYPDF------YYLSINFMTFTRIC--ALNLYIS 117
           S W +P+F      +Y+S N   FTR+C  A +++IS
Sbjct: 146 SKWKFPNFSDLSKGFYISPNERNFTRLCRSASSVHIS 182


>SPAC9E9.04 |||bcap family homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 188

 Score = 25.4 bits (53), Expect = 1.6
 Identities = 18/56 (32%), Positives = 28/56 (50%)
 Frame = +1

Query: 76  MTFTRICALNLYISRVVYYRR*IKKTKQS*VVSLQLERTRSPKAPAKTSQ*YAQQH 243
           +  T IC L L+   V   RR ++ TK+  +       T S ++  K SQ YAQ++
Sbjct: 51  LKITIICILILFADSV---RRVVRVTKEYDLAIAAPSTTESARSGYKASQFYAQRN 103


>SPBC16D10.05 |mok13||alpha-1,3-glucan synthase
            Mok13|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2358

 Score = 25.0 bits (52), Expect = 2.1
 Identities = 9/31 (29%), Positives = 14/31 (45%)
 Frame = -3

Query: 245  WCCCAYYWLVFAGAFGLRVRSSCKETTHDCF 153
            W CC +YW    G++  R    C    H+ +
Sbjct: 2069 WACCLWYW----GSYIDRSMQECHSFPHEVY 2095


>SPAC1783.07c |pap1|caf3, caf3|transcription factor
           Caf3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 552

 Score = 23.8 bits (49), Expect = 4.9
 Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
 Frame = -3

Query: 101 NAQIRVKVMKLID--K**KSG*FQFDHDTPHVNP 6
           N Q+R KV +L +  +  K G F F+   PH NP
Sbjct: 122 NDQLRQKVRQLEEELRILKDGSFTFEMSLPHRNP 155


>SPCC663.03 |pmd1||leptomycin efflux transporter
           Pmd1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1362

 Score = 23.4 bits (48), Expect = 6.5
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = +2

Query: 107 YIYRVLFIIEGELKRRSNHESFL 175
           YIY V FII GE   R   + +L
Sbjct: 158 YIYTVTFIIAGERIARRIRQDYL 180


>SPCC162.09c |hmg1||3-hydroxy-3-methylglutaryl-CoA
           reductase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1053

 Score = 23.0 bits (47), Expect = 8.5
 Identities = 11/33 (33%), Positives = 22/33 (66%)
 Frame = +1

Query: 31  SNWNYPDFYYLSINFMTFTRICALNLYISRVVY 129
           +NW++    Y+S +F++   +CAL+L I+  V+
Sbjct: 517 NNWSH----YISASFLSKWIVCALSLSIAVNVF 545


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 989,504
Number of Sequences: 5004
Number of extensions: 15122
Number of successful extensions: 40
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 40
length of database: 2,362,478
effective HSP length: 62
effective length of database: 2,052,230
effective search space used: 65671360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)