Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_N18
         (286 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0421 + 3181139-3184207                                           28   1.0  
12_01_1025 - 10506144-10506226,10506643-10506699,10507502-105076...    25   9.4  
01_01_1037 + 8192541-8193179                                           25   9.4  

>01_01_0421 + 3181139-3184207
          Length = 1022

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 8/23 (34%), Positives = 15/23 (65%)
 Frame = +1

Query: 25  SWSNWNYPDFYYLSINFMTFTRI 93
           +W NW    F++L+++   FTR+
Sbjct: 560 AWENWKDAQFFFLNLSHNEFTRV 582


>12_01_1025 -
           10506144-10506226,10506643-10506699,10507502-10507605,
           10507884-10507937,10508107-10508193,10509027-10509214,
           10509793-10509854,10510084-10510354,10510756-10510834,
           10511715-10511913,10512816-10512960,10513324-10513416,
           10514449-10514736
          Length = 569

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
 Frame = +1

Query: 37  WNYPDFYYLSINFMTFTRICALNL--YISRV 123
           W Y +F Y +IN     R C L++  Y SR+
Sbjct: 330 WEYANFSYKNINACEGIRFCPLSVPQYYSRL 360


>01_01_1037 + 8192541-8193179
          Length = 212

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 11/22 (50%), Positives = 12/22 (54%)
 Frame = -3

Query: 275 FFLVITESVDWCCCAYYWLVFA 210
           FFL +  S   CC A Y LV A
Sbjct: 47  FFLPLVASTSLCCAAAYLLVAA 68


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,290,785
Number of Sequences: 37544
Number of extensions: 90455
Number of successful extensions: 179
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 175
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 179
length of database: 14,793,348
effective HSP length: 70
effective length of database: 12,165,268
effective search space used: 291966432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)