Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_N18
         (286 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z19155-2|CAA79561.1| 1139|Caenorhabditis elegans Hypothetical pr...    28   0.94 
Z81561-1|CAB04552.2|  550|Caenorhabditis elegans Hypothetical pr...    27   1.6  
Z74038-2|CAE48502.1|  611|Caenorhabditis elegans Hypothetical pr...    26   5.0  
Z81584-9|CAB04680.2|  334|Caenorhabditis elegans Hypothetical pr...    25   6.6  
Z81584-2|CAE53738.1|  298|Caenorhabditis elegans Hypothetical pr...    25   6.6  
AF022981-2|AAG24200.1|  236|Caenorhabditis elegans Hypothetical ...    25   8.7  

>Z19155-2|CAA79561.1| 1139|Caenorhabditis elegans Hypothetical protein
            F54G8.3 protein.
          Length = 1139

 Score = 28.3 bits (60), Expect = 0.94
 Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 6/48 (12%)
 Frame = -3

Query: 263  ITESVDWCCCAYYWLVFA--GAFGLRVRS----SCKETTHDCFVFLIH 138
            + E++ W   A +W +FA  G  G R R     SC++ T +CF  + H
Sbjct: 960  VEENIPWFSTANFWNLFAIKGGDG-RPREVKHLSCQDNTANCFTVICH 1006


>Z81561-1|CAB04552.2|  550|Caenorhabditis elegans Hypothetical
           protein K03D10.3 protein.
          Length = 550

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = +1

Query: 175 LQLERTRSPKAPAKTSQ*YAQQHQSTLSVMTRKK 276
           L L+RT+   APA+T   + +Q Q T + MT ++
Sbjct: 467 LLLDRTKVRWAPAQTRPEFERQQQRTAAAMTSRR 500


>Z74038-2|CAE48502.1|  611|Caenorhabditis elegans Hypothetical
           protein F58B4.1b protein.
          Length = 611

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -3

Query: 236 CAYYWLVFAGAFGLRVRSSCKETTHDC 156
           C +Y   F      ++RS+CK T HDC
Sbjct: 539 CDFYKF-FGMCRSKKIRSNCKFTCHDC 564


>Z81584-9|CAB04680.2|  334|Caenorhabditis elegans Hypothetical
           protein T04C12.2a protein.
          Length = 334

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +2

Query: 146 KRRSNHESFLCNWNGLGV 199
           K+ SN  SFL +W GL V
Sbjct: 15  KKCSNDSSFLASWQGLSV 32


>Z81584-2|CAE53738.1|  298|Caenorhabditis elegans Hypothetical
           protein T04C12.2b protein.
          Length = 298

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +2

Query: 146 KRRSNHESFLCNWNGLGV 199
           K+ SN  SFL +W GL V
Sbjct: 15  KKCSNDSSFLASWQGLSV 32


>AF022981-2|AAG24200.1|  236|Caenorhabditis elegans Hypothetical
           protein W03F9.2a protein.
          Length = 236

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = +1

Query: 13  TCGVSWSNWNYPDFYYLSINFM 78
           TC V+WS W   +F+ L  + +
Sbjct: 69  TCSVAWSTWAAYEFHMLQTHII 90


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,532,163
Number of Sequences: 27780
Number of extensions: 85776
Number of successful extensions: 166
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 165
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 165
length of database: 12,740,198
effective HSP length: 69
effective length of database: 10,823,378
effective search space used: 270584450
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)