Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_N18
         (286 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    21   3.0  
AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.        21   3.0  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    21   3.0  
AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter...    21   3.0  
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    20   6.8  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    19   9.0  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    19   9.0  

>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 21.0 bits (42), Expect = 3.0
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = -3

Query: 221 LVFAGAFGLRVRSSCKETTHDCFVFLIH 138
           LV     GL++R+S K+T +      IH
Sbjct: 229 LVVYTRMGLKIRNSTKDTLNSVVQGAIH 256


>AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.
          Length = 200

 Score = 21.0 bits (42), Expect = 3.0
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = +1

Query: 181 LERTRSPKAPAKTSQ*YAQQHQS 249
           LE + S  A A  +  YAQQH S
Sbjct: 39  LESSLSAAAVAAAAVNYAQQHNS 61


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 21.0 bits (42), Expect = 3.0
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = +1

Query: 16  CGVSWSNWNYPDFYYLSI 69
           C + W++W Y D Y L +
Sbjct: 145 CVLKWASWTY-DGYQLEL 161


>AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter
           transporter-1A protein.
          Length = 203

 Score = 21.0 bits (42), Expect = 3.0
 Identities = 6/18 (33%), Positives = 9/18 (50%)
 Frame = -3

Query: 275 FFLVITESVDWCCCAYYW 222
           FF+ +   + W  C  YW
Sbjct: 88  FFMSMRSELPWGSCNNYW 105


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 19.8 bits (39), Expect = 6.8
 Identities = 10/33 (30%), Positives = 16/33 (48%)
 Frame = +1

Query: 1   ARGLTCGVSWSNWNYPDFYYLSINFMTFTRICA 99
           A+ L  G +     YP+   L  + + FT IC+
Sbjct: 473 AKRLWLGETIEAKTYPEVTMLFSDIVGFTEICS 505


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 19.4 bits (38), Expect = 9.0
 Identities = 6/8 (75%), Positives = 7/8 (87%)
 Frame = +3

Query: 108 IYIACCLL 131
           IYI CC+L
Sbjct: 248 IYIPCCML 255


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 19.4 bits (38), Expect = 9.0
 Identities = 6/8 (75%), Positives = 7/8 (87%)
 Frame = +3

Query: 108 IYIACCLL 131
           IYI CC+L
Sbjct: 248 IYIPCCML 255


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 65,249
Number of Sequences: 438
Number of extensions: 1069
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 49
effective length of database: 124,881
effective search space used:  5619645
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)