Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_N17
         (432 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC790.02 |pep3|vps18, vps18|ubiquitin-protein ligase E3 |Schiz...    28   0.53 
SPBC83.01 |ucp8||UBA/EH/EF hand domain protein Ucp8|Schizosaccha...    25   5.0  
SPBPB2B2.12c |||UDP-glucose 4-epimerase|Schizosaccharomyces pomb...    25   5.0  
SPBC16C6.13c |sec27||coatomer beta' subunit |Schizosaccharomyces...    25   6.6  
SPCC417.06c |ppk35|mug27|serine/threonine protein kinase Ppk35|S...    24   8.7  

>SPCC790.02 |pep3|vps18, vps18|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 900

 Score = 28.3 bits (60), Expect = 0.53
 Identities = 9/44 (20%), Positives = 28/44 (63%)
 Frame = +2

Query: 56  ERNNYWSPLSNTIDDIKPSSKGKTPSILF*TRKNYSSA*QCSST 187
           E+N YW   ++++ ++  +++ +  S++F  + ++  A +C++T
Sbjct: 355 EKNTYWLYTTDSLHELVVNNETREASLVFLEKGDFEKALECANT 398


>SPBC83.01 |ucp8||UBA/EH/EF hand domain protein
           Ucp8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 884

 Score = 25.0 bits (52), Expect = 5.0
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +3

Query: 213 LETLDWEVLPHPPYSPDIAPSDYHLFRS 296
           L+ LD+     PP  P  A  D+H+ RS
Sbjct: 84  LQELDYNKAGDPPILPKQAKDDHHIKRS 111


>SPBPB2B2.12c |||UDP-glucose 4-epimerase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 713

 Score = 25.0 bits (52), Expect = 5.0
 Identities = 8/28 (28%), Positives = 16/28 (57%)
 Frame = +3

Query: 144 RHEKIILLHDNARPHIAAPVKKYLETLD 227
           R EK+++  D+   H   P++ Y+  +D
Sbjct: 219 RREKLLVFGDDYDSHDGTPIRDYIHVVD 246


>SPBC16C6.13c |sec27||coatomer beta' subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 796

 Score = 24.6 bits (51), Expect = 6.6
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = -3

Query: 355 TQFLVSS*DVNRCAVRACA 299
           TQ LV S D+N   +RACA
Sbjct: 45  TQTLVRSFDINDVPIRACA 63


>SPCC417.06c |ppk35|mug27|serine/threonine protein kinase
           Ppk35|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 624

 Score = 24.2 bits (50), Expect = 8.7
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = +3

Query: 18  DQLGVVYYELLNPSE 62
           D  G+ YY+LL PSE
Sbjct: 68  DPKGLTYYQLLKPSE 82


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,028,312
Number of Sequences: 5004
Number of extensions: 43275
Number of successful extensions: 122
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 154067960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)