Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_N17
(432 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0326 - 2642408-2643607 31 0.40
10_05_0116 + 9314166-9314249,9314280-9315380 29 1.2
02_02_0340 + 9135846-9138377 29 1.2
04_01_0575 - 7454421-7455707 29 1.6
02_01_0421 + 3080801-3081120,3081578-3081663,3081987-3082125,308... 29 1.6
11_01_0678 - 5534879-5534883,5535430-5535529,5535638-5535799,553... 28 2.8
12_01_0264 - 1929022-1930212 28 3.7
11_01_0266 - 2010572-2011879 28 3.7
02_02_0184 - 7581345-7581769,7581880-7582296,7582891-7583661,758... 27 4.9
04_04_0421 - 25096422-25096594,25096658-25096830,25096918-250969... 27 6.5
02_04_0226 + 21073967-21074179,21074711-21074832,21074926-210753... 27 6.5
01_01_1228 - 9916850-9916919,9917462-9917533,9917629-9917700,991... 27 6.5
>01_01_0326 - 2642408-2643607
Length = 399
Score = 31.1 bits (67), Expect = 0.40
Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Frame = +3
Query: 192 AAPVKKYLETLDWEVLPHPPYSP-DIAPSDY 281
A V +LE+ +W+ LP PP+ P D+ P Y
Sbjct: 178 ARVVDGHLESCEWKPLPRPPFFPWDLTPLQY 208
>10_05_0116 + 9314166-9314249,9314280-9315380
Length = 394
Score = 29.5 bits (63), Expect = 1.2
Identities = 10/20 (50%), Positives = 15/20 (75%), Gaps = 1/20 (5%)
Frame = +3
Query: 225 DWEVLPHPPYSP-DIAPSDY 281
+W+ LP PP+ P D+ P+DY
Sbjct: 170 EWKPLPRPPFFPWDLTPTDY 189
>02_02_0340 + 9135846-9138377
Length = 843
Score = 29.5 bits (63), Expect = 1.2
Identities = 21/60 (35%), Positives = 29/60 (48%), Gaps = 3/60 (5%)
Frame = +3
Query: 12 WWDQLGVVYYELLNPSETITGALYRTQLMTLSRALKE---KRPQYYSRHEKIILLHDNAR 182
+W+ LG++ Y N G Y +L+ +KE RP YY H+ LLHD AR
Sbjct: 504 FWEALGIIAYGDQNNKADHVGLKYLNELVGNGFLMKEGDDSRP-YYVMHD---LLHDLAR 559
>04_01_0575 - 7454421-7455707
Length = 428
Score = 29.1 bits (62), Expect = 1.6
Identities = 10/20 (50%), Positives = 14/20 (70%), Gaps = 1/20 (5%)
Frame = +3
Query: 225 DWEVLPHPPYSP-DIAPSDY 281
+W LP PP+ P D+ P+DY
Sbjct: 181 EWRPLPRPPFFPWDLTPTDY 200
>02_01_0421 +
3080801-3081120,3081578-3081663,3081987-3082125,
3082470-3082554
Length = 209
Score = 29.1 bits (62), Expect = 1.6
Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 4/38 (10%)
Frame = +3
Query: 189 IAAPVKKYLETLDWEVLPHPP----YSPDIAPSDYHLF 290
+AA V+++ TL W PP + + PS++HLF
Sbjct: 80 VAAAVRRWTSTLTWPTRASPPRWTSRTRKVLPSEFHLF 117
>11_01_0678 -
5534879-5534883,5535430-5535529,5535638-5535799,
5536000-5536966,5537444-5537561,5538682-5538871,
5538952-5539107,5539296-5540315
Length = 905
Score = 28.3 bits (60), Expect = 2.8
Identities = 16/59 (27%), Positives = 27/59 (45%)
Frame = +3
Query: 123 KRPQYYSRHEKIILLHDNARPHIAAPVKKYLETLDWEVLPHPPYSPDIAPSDYHLFRSM 299
++P S H K++ +H + + K+L TLD +VL S Y +FR +
Sbjct: 408 RKPAAISEHLKVVKVHCKEVDEVVYKIGKWLSTLDIKVLIKRRNQSPKHESVYGVFRRL 466
>12_01_0264 - 1929022-1930212
Length = 396
Score = 27.9 bits (59), Expect = 3.7
Identities = 13/27 (48%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Frame = +3
Query: 210 YLETLDWEVLPHPPYSP-DIAPSDYHL 287
+LE W LPHPP P + P DY L
Sbjct: 174 HLEGCSWIKLPHPPCFPWKLRPVDYTL 200
>11_01_0266 - 2010572-2011879
Length = 435
Score = 27.9 bits (59), Expect = 3.7
Identities = 13/27 (48%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Frame = +3
Query: 210 YLETLDWEVLPHPPYSP-DIAPSDYHL 287
+LE W LPHPP P + P DY L
Sbjct: 237 HLEGCSWIKLPHPPCFPWKLRPVDYTL 263
>02_02_0184 -
7581345-7581769,7581880-7582296,7582891-7583661,
7583894-7584437,7584794-7584961,7585019-7585101,
7585190-7585631
Length = 949
Score = 27.5 bits (58), Expect = 4.9
Identities = 19/49 (38%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Frame = +3
Query: 129 PQYYSRHEKIILLHD-NARPHIAAPVKKYLETLDWEVLPHPPYSPDIAP 272
P++ SRH L D NA P A ++ L E LP PPY P+ P
Sbjct: 52 PRHGSRHPAPPSLRDLNADP--PAEDDDHIVHLHGEPLPQPPYFPEPKP 98
>04_04_0421 -
25096422-25096594,25096658-25096830,25096918-25096927,
25097230-25097452
Length = 192
Score = 27.1 bits (57), Expect = 6.5
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = +2
Query: 287 VQVHGTCSDGAAVHIL*RYQKLGLYVDSLKRQGY 388
V + C DG AVHI+ +G +D ++ +G+
Sbjct: 29 VAIKDVCEDGRAVHIVMELFIVGELLDKIQEEGH 62
>02_04_0226 +
21073967-21074179,21074711-21074832,21074926-21075370,
21075453-21075559,21075656-21076463,21076691-21077128,
21077349-21077537,21077616-21077843,21077943-21078140,
21078304-21078379,21078452-21078593,21078749-21079238
Length = 1151
Score = 27.1 bits (57), Expect = 6.5
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +3
Query: 51 NPSETITGALYRTQLMTLSRALKEKRP 131
+PSE+ T + + MT+S L EKRP
Sbjct: 655 SPSESNTAGITMSNPMTVSSTLSEKRP 681
>01_01_1228 -
9916850-9916919,9917462-9917533,9917629-9917700,
9917891-9918034,9918897-9918968,9920260-9920474
Length = 214
Score = 27.1 bits (57), Expect = 6.5
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = -1
Query: 141 NSIEGVFPLELGLMSSIVFDR 79
N+I G P ELG +SS+VF R
Sbjct: 125 NNITGTIPKELGKLSSLVFLR 145
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,219,455
Number of Sequences: 37544
Number of extensions: 288374
Number of successful extensions: 767
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 755
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 767
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 814473264
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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