Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_N17
(432 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC006747-1|AAF60509.1| 311|Caenorhabditis elegans Hypothetical ... 138 2e-33
U58746-8|AAB00629.1| 339|Caenorhabditis elegans Hypothetical pr... 125 1e-29
AC024800-4|AAF60722.1| 514|Caenorhabditis elegans Hypothetical ... 125 1e-29
AC006769-12|AAF60591.1| 384|Caenorhabditis elegans Hypothetical... 125 1e-29
U13071-3|AAA20673.1| 286|Caenorhabditis elegans Hypothetical pr... 40 6e-04
Z77657-4|CAB01148.2| 376|Caenorhabditis elegans Hypothetical pr... 29 1.4
U39848-6|AAL11100.1| 317|Caenorhabditis elegans Not-like (yeast... 29 1.9
U39848-5|AAL11099.1| 367|Caenorhabditis elegans Not-like (yeast... 29 1.9
U39848-4|AAA80691.1| 444|Caenorhabditis elegans Not-like (yeast... 29 1.9
U23172-18|ABC48253.1| 915|Caenorhabditis elegans Hypothetical p... 29 1.9
AL110479-15|CAB54361.2| 400|Caenorhabditis elegans Hypothetical... 28 2.5
U23174-5|AAC46711.1| 329|Caenorhabditis elegans Hypothetical pr... 28 3.3
AF106576-3|AAK68401.1| 329|Caenorhabditis elegans Hypothetical ... 28 3.3
AC006671-2|AAO21381.1| 459|Caenorhabditis elegans Nuclear hormo... 28 3.3
U49941-9|AAB53871.1| 141|Caenorhabditis elegans Hypothetical pr... 27 4.4
U32305-1|AAK18854.2| 469|Caenorhabditis elegans Hypothetical pr... 27 4.4
AF077546-6|AAC26315.1| 300|Caenorhabditis elegans Hypothetical ... 27 4.4
Z81115-6|CAD45598.1| 630|Caenorhabditis elegans Hypothetical pr... 27 7.7
Z70311-11|CAA94380.1| 484|Caenorhabditis elegans Hypothetical p... 27 7.7
Z70306-6|CAA94326.1| 484|Caenorhabditis elegans Hypothetical pr... 27 7.7
Z49068-8|CAA88861.1| 540|Caenorhabditis elegans Hypothetical pr... 27 7.7
U25697-1|AAA92842.1| 540|Caenorhabditis elegans CCT-4 protein. 27 7.7
AL132904-10|CAC35843.2| 1481|Caenorhabditis elegans Hypothetical... 27 7.7
AL032658-6|CAA21747.2| 630|Caenorhabditis elegans Hypothetical ... 27 7.7
>AC006747-1|AAF60509.1| 311|Caenorhabditis elegans Hypothetical
protein Y39A3A.1 protein.
Length = 311
Score = 138 bits (334), Expect = 2e-33
Identities = 65/141 (46%), Positives = 89/141 (63%)
Frame = +3
Query: 9 IWWDQLGVVYYELLNPSETITGALYRTQLMTLSRALKEKRPQYYSRHEKIILLHDNARPH 188
IWWD +GV++ ELL TI LY QL + A + RP R K++LLHDNARPH
Sbjct: 164 IWWDSMGVIFRELLPDGATINADLYCIQLEKVVHAHQLHRP----RGSKLLLLHDNARPH 219
Query: 189 IAAPVKKYLETLDWEVLPHPPYSPDIAPSDYHLFRSMAHALTAQRFTSYEDTKNWVYTWI 368
A ++ L+TL EVLPHPPYSPD+AP+DYHLFRS+ + L Q+F + + W+ +
Sbjct: 220 TALKTRQKLQTLGIEVLPHPPYSPDLAPTDYHLFRSLQNHLAGQKFHDRKAVETWLDDFF 279
Query: 369 ASKDKDIFRRGIRMLTERWEK 431
ASK ++ + GI L RW++
Sbjct: 280 ASKSQEFYAEGIAQLPLRWQE 300
>U58746-8|AAB00629.1| 339|Caenorhabditis elegans Hypothetical
protein R05G6.2 protein.
Length = 339
Score = 125 bits (302), Expect = 1e-29
Identities = 60/141 (42%), Positives = 86/141 (60%)
Frame = +3
Query: 9 IWWDQLGVVYYELLNPSETITGALYRTQLMTLSRALKEKRPQYYSRHEKIILLHDNARPH 188
+WW G V++ELL ++TIT Y QL R ++ +Y EK+ LHDNARPH
Sbjct: 195 VWWGVQGPVHWELLPTNKTITADYYCAQL---DRVAEKTNGKY----EKLYFLHDNARPH 247
Query: 189 IAAPVKKYLETLDWEVLPHPPYSPDIAPSDYHLFRSMAHALTAQRFTSYEDTKNWVYTWI 368
+A + L+ L W VLPHPPYSPD+AP+DYHLF S++ + ++F E K + T+
Sbjct: 248 VAKKTFQKLQDLGWTVLPHPPYSPDLAPTDYHLFLSLSDYMRDKQFDDEEHLKTELSTFF 307
Query: 369 ASKDKDIFRRGIRMLTERWEK 431
+S+ D F RGI ML +W++
Sbjct: 308 SSRSPDFFSRGIMMLPSKWQQ 328
>AC024800-4|AAF60722.1| 514|Caenorhabditis elegans Hypothetical
protein Y49F6A.4 protein.
Length = 514
Score = 125 bits (302), Expect = 1e-29
Identities = 60/141 (42%), Positives = 86/141 (60%)
Frame = +3
Query: 9 IWWDQLGVVYYELLNPSETITGALYRTQLMTLSRALKEKRPQYYSRHEKIILLHDNARPH 188
+WW G V++ELL ++TIT Y QL R ++ +Y EK+ LHDNARPH
Sbjct: 170 VWWGVQGPVHWELLPTNKTITADYYCAQL---DRVAEKTNGKY----EKLYFLHDNARPH 222
Query: 189 IAAPVKKYLETLDWEVLPHPPYSPDIAPSDYHLFRSMAHALTAQRFTSYEDTKNWVYTWI 368
+A + L+ L W VLPHPPYSPD+AP+DYHLF S++ + ++F E K + T+
Sbjct: 223 VAKKTFQKLQDLGWTVLPHPPYSPDLAPTDYHLFLSLSDYMRDKQFDDEEHLKTELSTFF 282
Query: 369 ASKDKDIFRRGIRMLTERWEK 431
+S+ D F RGI ML +W++
Sbjct: 283 SSRSPDFFSRGIMMLPSKWQQ 303
>AC006769-12|AAF60591.1| 384|Caenorhabditis elegans Hypothetical
protein Y45G12C.13 protein.
Length = 384
Score = 125 bits (302), Expect = 1e-29
Identities = 60/141 (42%), Positives = 86/141 (60%)
Frame = +3
Query: 9 IWWDQLGVVYYELLNPSETITGALYRTQLMTLSRALKEKRPQYYSRHEKIILLHDNARPH 188
+WW G V++ELL ++TIT Y QL R ++ +Y EK+ LHDNARPH
Sbjct: 195 VWWGVQGPVHWELLPTNKTITADYYCAQL---DRVAEKTNGKY----EKLYFLHDNARPH 247
Query: 189 IAAPVKKYLETLDWEVLPHPPYSPDIAPSDYHLFRSMAHALTAQRFTSYEDTKNWVYTWI 368
+A + L+ L W VLPHPPYSPD+AP+DYHLF S++ + ++F E K + T+
Sbjct: 248 VAKKTFQKLQDLGWTVLPHPPYSPDLAPTDYHLFLSLSDYMRDKQFDDEEHLKTELSTFF 307
Query: 369 ASKDKDIFRRGIRMLTERWEK 431
+S+ D F RGI ML +W++
Sbjct: 308 SSRSPDFFSRGIMMLPSKWQQ 328
>U13071-3|AAA20673.1| 286|Caenorhabditis elegans Hypothetical
protein T22F7.4 protein.
Length = 286
Score = 40.3 bits (90), Expect = 6e-04
Identities = 21/59 (35%), Positives = 30/59 (50%)
Frame = +3
Query: 171 DNARPHIAAPVKKYLETLDWEVLPHPPYSPDIAPSDYHLFRSMAHALTAQRFTSYEDTK 347
+NA P+ V + L W VL +PPYS APS+Y F +A L + F ++ K
Sbjct: 10 NNACPYGLKQVLQELARRGWMVLLYPPYSQGTAPSEYWSFSDVARVLGGRTFNTHGSFK 68
>Z77657-4|CAB01148.2| 376|Caenorhabditis elegans Hypothetical
protein F08H9.6 protein.
Length = 376
Score = 29.1 bits (62), Expect = 1.4
Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 4/43 (9%)
Frame = +3
Query: 273 SDYHL---FRSMAHALTAQRFTSYEDT-KNWVYTWIASKDKDI 389
S Y+L F S + +T + T+Y+ T K W+ TW A KD +
Sbjct: 225 SSYNLARGFESSTNMMTVRFKTNYDITDKGWLATWKAKKDMPV 267
>U39848-6|AAL11100.1| 317|Caenorhabditis elegans Not-like (yeast
ccr4/not complexcomponent) protein 2, isoform c protein.
Length = 317
Score = 28.7 bits (61), Expect = 1.9
Identities = 16/45 (35%), Positives = 22/45 (48%)
Frame = -2
Query: 404 NPTSEDILVF*GYPRINPIFGIFIRCEPLRRQSMCHGPEQVIIGR 270
N SED+L + Y N I+ + CE R+ H EQV + R
Sbjct: 139 NKVSEDVLFYLFYNCPNEIYQVAAACELYAREWRFHKSEQVWLTR 183
>U39848-5|AAL11099.1| 367|Caenorhabditis elegans Not-like (yeast
ccr4/not complexcomponent) protein 2, isoform b protein.
Length = 367
Score = 28.7 bits (61), Expect = 1.9
Identities = 16/45 (35%), Positives = 22/45 (48%)
Frame = -2
Query: 404 NPTSEDILVF*GYPRINPIFGIFIRCEPLRRQSMCHGPEQVIIGR 270
N SED+L + Y N I+ + CE R+ H EQV + R
Sbjct: 189 NKVSEDVLFYLFYNCPNEIYQVAAACELYAREWRFHKSEQVWLTR 233
>U39848-4|AAA80691.1| 444|Caenorhabditis elegans Not-like (yeast
ccr4/not complexcomponent) protein 2, isoform a protein.
Length = 444
Score = 28.7 bits (61), Expect = 1.9
Identities = 16/45 (35%), Positives = 22/45 (48%)
Frame = -2
Query: 404 NPTSEDILVF*GYPRINPIFGIFIRCEPLRRQSMCHGPEQVIIGR 270
N SED+L + Y N I+ + CE R+ H EQV + R
Sbjct: 266 NKVSEDVLFYLFYNCPNEIYQVAAACELYAREWRFHKSEQVWLTR 310
>U23172-18|ABC48253.1| 915|Caenorhabditis elegans Hypothetical
protein F25B5.1a protein.
Length = 915
Score = 28.7 bits (61), Expect = 1.9
Identities = 14/33 (42%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
Frame = -1
Query: 273 TVQCLVNTAGGVTLPNQ--VFPSTFSREPQYVD 181
T C + +A GV + +Q VFP+ F RE +Y+D
Sbjct: 470 TAACAMKSAEGVYVADQNNVFPTYFYREKRYLD 502
>AL110479-15|CAB54361.2| 400|Caenorhabditis elegans Hypothetical
protein Y105C5B.16 protein.
Length = 400
Score = 28.3 bits (60), Expect = 2.5
Identities = 12/39 (30%), Positives = 19/39 (48%)
Frame = +3
Query: 252 YSPDIAPSDYHLFRSMAHALTAQRFTSYEDTKNWVYTWI 368
+ P++ Y F + LT F Y+ T + VYTW+
Sbjct: 18 FDPELYVPKYKDFLDVQRNLTKHIFRDYDPTVSPVYTWV 56
>U23174-5|AAC46711.1| 329|Caenorhabditis elegans Hypothetical
protein R10H1.3 protein.
Length = 329
Score = 27.9 bits (59), Expect = 3.3
Identities = 18/66 (27%), Positives = 32/66 (48%)
Frame = +3
Query: 132 QYYSRHEKIILLHDNARPHIAAPVKKYLETLDWEVLPHPPYSPDIAPSDYHLFRSMAHAL 311
++YSR + DNA H++ + Y + +L P SPD+ P + +L+ + +
Sbjct: 219 RHYSRKD-FRFQQDNATIHVSNSTRDYFKLKKINLLDWPARSPDLNPIE-NLWGILVRIV 276
Query: 312 TAQRFT 329
AQ T
Sbjct: 277 YAQNKT 282
>AF106576-3|AAK68401.1| 329|Caenorhabditis elegans Hypothetical
protein W07E6.6 protein.
Length = 329
Score = 27.9 bits (59), Expect = 3.3
Identities = 18/66 (27%), Positives = 32/66 (48%)
Frame = +3
Query: 132 QYYSRHEKIILLHDNARPHIAAPVKKYLETLDWEVLPHPPYSPDIAPSDYHLFRSMAHAL 311
++YSR + DNA H++ + Y + +L P SPD+ P + +L+ + +
Sbjct: 219 RHYSRKD-FRFQQDNATIHVSNSTRDYFKLKKINLLDWPARSPDLNPIE-NLWGILVRIV 276
Query: 312 TAQRFT 329
AQ T
Sbjct: 277 YAQNKT 282
>AC006671-2|AAO21381.1| 459|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 88, isoform b protein.
Length = 459
Score = 27.9 bits (59), Expect = 3.3
Identities = 18/66 (27%), Positives = 32/66 (48%)
Frame = +3
Query: 132 QYYSRHEKIILLHDNARPHIAAPVKKYLETLDWEVLPHPPYSPDIAPSDYHLFRSMAHAL 311
++YSR + DNA H++ + Y + +L P SPD+ P + +L+ + +
Sbjct: 349 RHYSRKD-FRFQQDNATIHVSNSTRDYFKLKKINLLDWPARSPDLNPIE-NLWGILVRIV 406
Query: 312 TAQRFT 329
AQ T
Sbjct: 407 YAQNKT 412
>U49941-9|AAB53871.1| 141|Caenorhabditis elegans Hypothetical
protein K10B3.2 protein.
Length = 141
Score = 27.5 bits (58), Expect = 4.4
Identities = 16/57 (28%), Positives = 27/57 (47%)
Frame = +3
Query: 159 ILLHDNARPHIAAPVKKYLETLDWEVLPHPPYSPDIAPSDYHLFRSMAHALTAQRFT 329
I DNA H++ + Y + +L P SPD+ P + +L+ + + AQ T
Sbjct: 39 IFCQDNATIHVSNSTRDYFKLKKINLLDWPARSPDLNPIE-NLWGILVRIVYAQNKT 94
>U32305-1|AAK18854.2| 469|Caenorhabditis elegans Hypothetical
protein B0336.6 protein.
Length = 469
Score = 27.5 bits (58), Expect = 4.4
Identities = 10/13 (76%), Positives = 11/13 (84%)
Frame = +3
Query: 249 PYSPDIAPSDYHL 287
PY+P IAPSDY L
Sbjct: 205 PYAPSIAPSDYRL 217
>AF077546-6|AAC26315.1| 300|Caenorhabditis elegans Hypothetical
protein T08E11.2 protein.
Length = 300
Score = 27.5 bits (58), Expect = 4.4
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = -2
Query: 362 RINPIFGIFIRCEPLRRQS 306
RIN FG+F+RCE R S
Sbjct: 179 RINGFFGVFLRCEKQRFDS 197
>Z81115-6|CAD45598.1| 630|Caenorhabditis elegans Hypothetical
protein Y76A2B.6 protein.
Length = 630
Score = 26.6 bits (56), Expect = 7.7
Identities = 11/33 (33%), Positives = 17/33 (51%)
Frame = +3
Query: 240 PHPPYSPDIAPSDYHLFRSMAHALTAQRFTSYE 338
P PPY P P+ YH + L + F+++E
Sbjct: 538 PLPPYVPKGEPNGYHHNHAYITGLFGKNFSNFE 570
>Z70311-11|CAA94380.1| 484|Caenorhabditis elegans Hypothetical
protein T25B9.9 protein.
Length = 484
Score = 26.6 bits (56), Expect = 7.7
Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Frame = +3
Query: 237 LPHPPYSPDIAPSDYHLF-RSMAHALTAQRFTSY 335
LP P SPD D +F + ++ AL A + SY
Sbjct: 303 LPRPQVSPDTVVQDKRVFIKQISKALYASKIVSY 336
>Z70306-6|CAA94326.1| 484|Caenorhabditis elegans Hypothetical
protein T25B9.9 protein.
Length = 484
Score = 26.6 bits (56), Expect = 7.7
Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Frame = +3
Query: 237 LPHPPYSPDIAPSDYHLF-RSMAHALTAQRFTSY 335
LP P SPD D +F + ++ AL A + SY
Sbjct: 303 LPRPQVSPDTVVQDKRVFIKQISKALYASKIVSY 336
>Z49068-8|CAA88861.1| 540|Caenorhabditis elegans Hypothetical
protein K01C8.10 protein.
Length = 540
Score = 26.6 bits (56), Expect = 7.7
Identities = 14/45 (31%), Positives = 25/45 (55%)
Frame = +3
Query: 3 TRIWWDQLGVVYYELLNPSETITGALYRTQLMTLSRALKEKRPQY 137
TRI ++G++ +++ P + + T + RALKE+R QY
Sbjct: 239 TRIEKAKIGLIQFQISPPKTDMENQVIITDYAQMDRALKEER-QY 282
>U25697-1|AAA92842.1| 540|Caenorhabditis elegans CCT-4 protein.
Length = 540
Score = 26.6 bits (56), Expect = 7.7
Identities = 14/45 (31%), Positives = 25/45 (55%)
Frame = +3
Query: 3 TRIWWDQLGVVYYELLNPSETITGALYRTQLMTLSRALKEKRPQY 137
TRI ++G++ +++ P + + T + RALKE+R QY
Sbjct: 239 TRIEKAKIGLIQFQISPPKTDMENQVIITDYAQMDRALKEER-QY 282
>AL132904-10|CAC35843.2| 1481|Caenorhabditis elegans Hypothetical
protein Y111B2A.14 protein.
Length = 1481
Score = 26.6 bits (56), Expect = 7.7
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = +3
Query: 102 LSRALKEKRPQYYSRHEKIILLHDNA 179
L A K+K+P S E+IIL+ DNA
Sbjct: 256 LEPAEKKKKPDSSSSSEEIILIDDNA 281
>AL032658-6|CAA21747.2| 630|Caenorhabditis elegans Hypothetical
protein Y76A2B.6 protein.
Length = 630
Score = 26.6 bits (56), Expect = 7.7
Identities = 11/33 (33%), Positives = 17/33 (51%)
Frame = +3
Query: 240 PHPPYSPDIAPSDYHLFRSMAHALTAQRFTSYE 338
P PPY P P+ YH + L + F+++E
Sbjct: 538 PLPPYVPKGEPNGYHHNHAYITGLFGKNFSNFE 570
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,204,331
Number of Sequences: 27780
Number of extensions: 244594
Number of successful extensions: 656
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 631
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 652
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 724655464
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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