Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_N16
(332 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC16E8.16 |||transcription factor TFIIB |Schizosaccharomyces p... 86 2e-18
SPBC24C6.03 |||proline-tRNA ligase |Schizosaccharomyces pombe|ch... 25 2.3
SPBC1198.08 |||dipeptidase Dug1 |Schizosaccharomyces pombe|chr 2... 25 2.3
SPAC6G10.03c |||abhydrolase family protein, unknown biological r... 25 3.0
SPBC15C4.06c ||SPBC21H7.01c|ubiquitin-protein ligase E3 |Schizos... 25 4.0
SPBC14C8.14c |pol5||DNA polymerase phi|Schizosaccharomyces pombe... 24 5.3
SPCC14G10.04 |||sequence orphan|Schizosaccharomyces pombe|chr 3|... 24 7.0
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 23 9.2
SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces pombe... 23 9.2
SPBC215.04 |git11||heterotrimeric G protein gamma subunit Git11 ... 23 9.2
SPBC3E7.10 |fma1||methionine aminopeptidase Fma1 |Schizosaccharo... 23 9.2
>SPAC16E8.16 |||transcription factor TFIIB |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 340
Score = 85.8 bits (203), Expect = 2e-18
Identities = 40/82 (48%), Positives = 53/82 (64%), Gaps = 2/82 (2%)
Frame = +2
Query: 23 TSRMETNKVVCYAHPDAP-LIEDYRAGDMICSECGLVVGDRVIDVGSEWRTFSN-EKSGV 196
TS + + D P L+E++ +GD +C CGLV+GDR+ID SEWRTFSN +++
Sbjct: 11 TSMLSVKMICSECREDPPNLVEEFSSGDTVCGSCGLVLGDRIIDTRSEWRTFSNSDEASG 70
Query: 197 DPSRVGGPENPLLSGGDLSTII 262
DPSRVG NPLL+G L T I
Sbjct: 71 DPSRVGKVANPLLNGSQLDTTI 92
>SPBC24C6.03 |||proline-tRNA ligase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 425
Score = 25.4 bits (53), Expect = 2.3
Identities = 13/40 (32%), Positives = 17/40 (42%)
Frame = -2
Query: 124 SAF*TYHVTSSVILNERCVWMRVAHHLVSLHSRRARHDCL 5
SA H++S I + W + L LH R R CL
Sbjct: 72 SAISLAHLSSKEIWEKSGRWQKTGSELFRLHDRNDREMCL 111
>SPBC1198.08 |||dipeptidase Dug1 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 474
Score = 25.4 bits (53), Expect = 2.3
Identities = 11/35 (31%), Positives = 19/35 (54%)
Frame = +3
Query: 168 EHSAMKNLVLIPLVLVDQRIHYYQEVISLQSLVQG 272
E S KN++L+P+ D H E + L + ++G
Sbjct: 424 EQSLKKNVLLLPMGRGDDGAHSINEKLDLDNFLKG 458
>SPAC6G10.03c |||abhydrolase family protein, unknown biological
role|Schizosaccharomyces pombe|chr 1|||Manual
Length = 428
Score = 25.0 bits (52), Expect = 3.0
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +2
Query: 149 DVGSEWRTFSNEKSGVDPSRVGGPENPL 232
+V +E E +G++PSR P+NPL
Sbjct: 241 NVTNEVLQTQEETTGLEPSRPSKPKNPL 268
>SPBC15C4.06c ||SPBC21H7.01c|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 556
Score = 24.6 bits (51), Expect = 4.0
Identities = 10/23 (43%), Positives = 17/23 (73%)
Frame = -2
Query: 148 NNSITNYQSAF*TYHVTSSVILN 80
N +I+NY S+ +Y+ SS+I+N
Sbjct: 147 NTAISNYVSSGLSYYGNSSIIMN 169
>SPBC14C8.14c |pol5||DNA polymerase phi|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 959
Score = 24.2 bits (50), Expect = 5.3
Identities = 9/24 (37%), Positives = 15/24 (62%)
Frame = +3
Query: 216 DQRIHYYQEVISLQSLVQGGVMHH 287
D+R Y+ + LQS+V G++ H
Sbjct: 97 DERDFYFGLLFGLQSIVYSGILTH 120
>SPCC14G10.04 |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 497
Score = 23.8 bits (49), Expect = 7.0
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = -3
Query: 231 NGFSGPPTREGSTPDFS 181
NG +GP T + STP+ S
Sbjct: 290 NGLAGPETSKTSTPNMS 306
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with
EF hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 23.4 bits (48), Expect = 9.2
Identities = 8/21 (38%), Positives = 13/21 (61%)
Frame = +2
Query: 182 EKSGVDPSRVGGPENPLLSGG 244
+++G+ P GGP P +GG
Sbjct: 742 QRTGMQPQMTGGPMLPQRTGG 762
>SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 972
Score = 23.4 bits (48), Expect = 9.2
Identities = 12/36 (33%), Positives = 17/36 (47%)
Frame = -3
Query: 327 FLLFWYFDTPKLSNDASPLPGPMIVERSPPDNNGFS 220
F FW DTPK S + + ++ + S N FS
Sbjct: 380 FSKFWNSDTPKFSEENARGWCNVLDDESSQQNQNFS 415
>SPBC215.04 |git11||heterotrimeric G protein gamma subunit Git11
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 72
Score = 23.4 bits (48), Expect = 9.2
Identities = 10/32 (31%), Positives = 18/32 (56%)
Frame = -3
Query: 297 KLSNDASPLPGPMIVERSPPDNNGFSGPPTRE 202
+ +N A+ +P PM+V +PP N T++
Sbjct: 19 EFANYANNIPEPMMVSVAPPKANPSVSSKTKQ 50
>SPBC3E7.10 |fma1||methionine aminopeptidase Fma1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 379
Score = 23.4 bits (48), Expect = 9.2
Identities = 22/95 (23%), Positives = 41/95 (43%), Gaps = 2/95 (2%)
Frame = +2
Query: 41 NKVVCYAHPDAPLIEDYRAGDMICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGP 220
N+++C+ PD +ED GD++ + L D+ + + +K+ +P V
Sbjct: 187 NEIICHGIPDQRPLED---GDIVNIDVSLYHNGFHGDLNETY--YVGDKAKANPDLVCLV 241
Query: 221 ENPLLSGGDLSTIIGPGRGDASFDSFG--VSKYQN 319
EN ++ + PG F FG + K+ N
Sbjct: 242 ENTRIALDKAIAAVKPG---VLFQEFGNIIEKHTN 273
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,488,440
Number of Sequences: 5004
Number of extensions: 30173
Number of successful extensions: 88
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 87
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 93942212
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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