Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_N16
(332 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X59268-1|CAA41958.1| 316|Homo sapiens IIB protein protein. 166 2e-41
M76766-1|AAA61149.1| 316|Homo sapiens transcription factor prot... 166 2e-41
BC021000-1|AAH21000.1| 316|Homo sapiens general transcription f... 166 2e-41
BC020597-1|AAH20597.1| 316|Homo sapiens general transcription f... 166 2e-41
AL445991-4|CAI41341.1| 316|Homo sapiens general transcription f... 166 2e-41
AL445991-3|CAI41342.1| 224|Homo sapiens general transcription f... 164 7e-41
S44184-1|AAB23144.1| 311|Homo sapiens S300-II protein. 159 3e-39
AL445991-5|CAI41343.1| 231|Homo sapiens general transcription f... 149 3e-36
BC114943-1|AAI14944.1| 342|Homo sapiens MAGIX protein protein. 30 2.0
AK025340-1|BAB15115.1| 275|Homo sapiens protein ( Homo sapiens ... 30 2.0
AB058717-1|BAB47443.1| 1285|Homo sapiens KIAA1814 protein protein. 29 4.5
>X59268-1|CAA41958.1| 316|Homo sapiens IIB protein protein.
Length = 316
Score = 166 bits (403), Expect = 2e-41
Identities = 79/107 (73%), Positives = 88/107 (82%), Gaps = 1/107 (0%)
Frame = +2
Query: 14 MASTSRMET-NKVVCYAHPDAPLIEDYRAGDMICSECGLVVGDRVIDVGSEWRTFSNEKS 190
MASTSR++ +V C HPDA L+EDYRAGDMIC ECGLVVGDRVIDVGSEWRTFSN+K+
Sbjct: 1 MASTSRLDALPRVTCPNHPDAILVEDYRAGDMICPECGLVVGDRVIDVGSEWRTFSNDKA 60
Query: 191 GVDPSRVGGPENPLLSGGDLSTIIGPGRGDASFDSFGVSKYQNRRNI 331
DPSRVG +NPLLS GDLST+IG G G ASFD FG SKYQNRR +
Sbjct: 61 TKDPSRVGDSQNPLLSDGDLSTMIGKGTGAASFDEFGNSKYQNRRTM 107
>M76766-1|AAA61149.1| 316|Homo sapiens transcription factor
protein.
Length = 316
Score = 166 bits (403), Expect = 2e-41
Identities = 79/107 (73%), Positives = 88/107 (82%), Gaps = 1/107 (0%)
Frame = +2
Query: 14 MASTSRMET-NKVVCYAHPDAPLIEDYRAGDMICSECGLVVGDRVIDVGSEWRTFSNEKS 190
MASTSR++ +V C HPDA L+EDYRAGDMIC ECGLVVGDRVIDVGSEWRTFSN+K+
Sbjct: 1 MASTSRLDALPRVTCPNHPDAILVEDYRAGDMICPECGLVVGDRVIDVGSEWRTFSNDKA 60
Query: 191 GVDPSRVGGPENPLLSGGDLSTIIGPGRGDASFDSFGVSKYQNRRNI 331
DPSRVG +NPLLS GDLST+IG G G ASFD FG SKYQNRR +
Sbjct: 61 TKDPSRVGDSQNPLLSDGDLSTMIGKGTGAASFDEFGNSKYQNRRTM 107
>BC021000-1|AAH21000.1| 316|Homo sapiens general transcription
factor IIB protein.
Length = 316
Score = 166 bits (403), Expect = 2e-41
Identities = 79/107 (73%), Positives = 88/107 (82%), Gaps = 1/107 (0%)
Frame = +2
Query: 14 MASTSRMET-NKVVCYAHPDAPLIEDYRAGDMICSECGLVVGDRVIDVGSEWRTFSNEKS 190
MASTSR++ +V C HPDA L+EDYRAGDMIC ECGLVVGDRVIDVGSEWRTFSN+K+
Sbjct: 1 MASTSRLDALPRVTCPNHPDAILVEDYRAGDMICPECGLVVGDRVIDVGSEWRTFSNDKA 60
Query: 191 GVDPSRVGGPENPLLSGGDLSTIIGPGRGDASFDSFGVSKYQNRRNI 331
DPSRVG +NPLLS GDLST+IG G G ASFD FG SKYQNRR +
Sbjct: 61 TKDPSRVGDSQNPLLSDGDLSTMIGKGTGAASFDEFGNSKYQNRRTM 107
>BC020597-1|AAH20597.1| 316|Homo sapiens general transcription
factor IIB protein.
Length = 316
Score = 166 bits (403), Expect = 2e-41
Identities = 79/107 (73%), Positives = 88/107 (82%), Gaps = 1/107 (0%)
Frame = +2
Query: 14 MASTSRMET-NKVVCYAHPDAPLIEDYRAGDMICSECGLVVGDRVIDVGSEWRTFSNEKS 190
MASTSR++ +V C HPDA L+EDYRAGDMIC ECGLVVGDRVIDVGSEWRTFSN+K+
Sbjct: 1 MASTSRLDALPRVTCPNHPDAILVEDYRAGDMICPECGLVVGDRVIDVGSEWRTFSNDKA 60
Query: 191 GVDPSRVGGPENPLLSGGDLSTIIGPGRGDASFDSFGVSKYQNRRNI 331
DPSRVG +NPLLS GDLST+IG G G ASFD FG SKYQNRR +
Sbjct: 61 TKDPSRVGDSQNPLLSDGDLSTMIGKGTGAASFDEFGNSKYQNRRTM 107
>AL445991-4|CAI41341.1| 316|Homo sapiens general transcription
factor IIB protein.
Length = 316
Score = 166 bits (403), Expect = 2e-41
Identities = 79/107 (73%), Positives = 88/107 (82%), Gaps = 1/107 (0%)
Frame = +2
Query: 14 MASTSRMET-NKVVCYAHPDAPLIEDYRAGDMICSECGLVVGDRVIDVGSEWRTFSNEKS 190
MASTSR++ +V C HPDA L+EDYRAGDMIC ECGLVVGDRVIDVGSEWRTFSN+K+
Sbjct: 1 MASTSRLDALPRVTCPNHPDAILVEDYRAGDMICPECGLVVGDRVIDVGSEWRTFSNDKA 60
Query: 191 GVDPSRVGGPENPLLSGGDLSTIIGPGRGDASFDSFGVSKYQNRRNI 331
DPSRVG +NPLLS GDLST+IG G G ASFD FG SKYQNRR +
Sbjct: 61 TKDPSRVGDSQNPLLSDGDLSTMIGKGTGAASFDEFGNSKYQNRRTM 107
>AL445991-3|CAI41342.1| 224|Homo sapiens general transcription
factor IIB protein.
Length = 224
Score = 164 bits (398), Expect = 7e-41
Identities = 78/106 (73%), Positives = 87/106 (82%), Gaps = 1/106 (0%)
Frame = +2
Query: 17 ASTSRMET-NKVVCYAHPDAPLIEDYRAGDMICSECGLVVGDRVIDVGSEWRTFSNEKSG 193
ASTSR++ +V C HPDA L+EDYRAGDMIC ECGLVVGDRVIDVGSEWRTFSN+K+
Sbjct: 1 ASTSRLDALPRVTCPNHPDAILVEDYRAGDMICPECGLVVGDRVIDVGSEWRTFSNDKAT 60
Query: 194 VDPSRVGGPENPLLSGGDLSTIIGPGRGDASFDSFGVSKYQNRRNI 331
DPSRVG +NPLLS GDLST+IG G G ASFD FG SKYQNRR +
Sbjct: 61 KDPSRVGDSQNPLLSDGDLSTMIGKGTGAASFDEFGNSKYQNRRTM 106
>S44184-1|AAB23144.1| 311|Homo sapiens S300-II protein.
Length = 311
Score = 159 bits (385), Expect = 3e-39
Identities = 73/96 (76%), Positives = 80/96 (83%)
Frame = +2
Query: 44 KVVCYAHPDAPLIEDYRAGDMICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPE 223
+V C HPDA L+EDYRAGDMIC ECGLVVGDRVIDVGSEWRTFSN+K+ DPSRVG +
Sbjct: 7 RVTCPNHPDAILVEDYRAGDMICPECGLVVGDRVIDVGSEWRTFSNDKATKDPSRVGDSQ 66
Query: 224 NPLLSGGDLSTIIGPGRGDASFDSFGVSKYQNRRNI 331
NPLLS GDLST+IG G G ASFD FG SKYQNRR +
Sbjct: 67 NPLLSDGDLSTMIGKGTGAASFDEFGNSKYQNRRTM 102
>AL445991-5|CAI41343.1| 231|Homo sapiens general transcription
factor IIB protein.
Length = 231
Score = 149 bits (360), Expect = 3e-36
Identities = 74/107 (69%), Positives = 83/107 (77%), Gaps = 1/107 (0%)
Frame = +2
Query: 14 MASTSRMET-NKVVCYAHPDAPLIEDYRAGDMICSECGLVVGDRVIDVGSEWRTFSNEKS 190
MASTSR++ +V C HPDA L+EDYRAGDMIC EC DRVIDVGSEWRTFSN+K+
Sbjct: 1 MASTSRLDALPRVTCPNHPDAILVEDYRAGDMICPEC-----DRVIDVGSEWRTFSNDKA 55
Query: 191 GVDPSRVGGPENPLLSGGDLSTIIGPGRGDASFDSFGVSKYQNRRNI 331
DPSRVG +NPLLS GDLST+IG G G ASFD FG SKYQNRR +
Sbjct: 56 TKDPSRVGDSQNPLLSDGDLSTMIGKGTGAASFDEFGNSKYQNRRTM 102
>BC114943-1|AAI14944.1| 342|Homo sapiens MAGIX protein protein.
Length = 342
Score = 29.9 bits (64), Expect = 2.0
Identities = 23/71 (32%), Positives = 28/71 (39%), Gaps = 1/71 (1%)
Frame = +2
Query: 68 DAPLIEDYRAGDMICSECG-LVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLSGG 244
D PL D CG L VGD V+ + E V+ R GGP+ L+
Sbjct: 89 DTPLAVRGLLKDGPAQRCGRLEVGDLVLHINGESTQGLTHAQAVERIRAGGPQLHLVIRR 148
Query: 245 DLSTIIGPGRG 277
L T G RG
Sbjct: 149 PLETHPGKPRG 159
>AK025340-1|BAB15115.1| 275|Homo sapiens protein ( Homo sapiens
cDNA: FLJ21687 fis, clone COL09385. ).
Length = 275
Score = 29.9 bits (64), Expect = 2.0
Identities = 23/71 (32%), Positives = 28/71 (39%), Gaps = 1/71 (1%)
Frame = +2
Query: 68 DAPLIEDYRAGDMICSECG-LVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLSGG 244
D PL D CG L VGD V+ + E V+ R GGP+ L+
Sbjct: 89 DTPLAVRGLLKDGPAQRCGRLEVGDLVLHINGESTQGLTHAQAVERIRAGGPQLHLVIRR 148
Query: 245 DLSTIIGPGRG 277
L T G RG
Sbjct: 149 PLETHPGKPRG 159
>AB058717-1|BAB47443.1| 1285|Homo sapiens KIAA1814 protein protein.
Length = 1285
Score = 28.7 bits (61), Expect = 4.5
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = -3
Query: 267 GPMIVERSPPDNNGFSGPPTREGSTPDFSLLNVL 166
GP ++ PP N PPT S P+ +LL L
Sbjct: 1161 GPPVLHAPPPPNAALPPPPTLLASNPEPALLQSL 1194
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 54,261,169
Number of Sequences: 237096
Number of extensions: 1215036
Number of successful extensions: 3444
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 3105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3443
length of database: 76,859,062
effective HSP length: 80
effective length of database: 57,891,382
effective search space used: 1736741460
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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