Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_N16
(332 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U35148-1|AAA79093.1| 315|Drosophila melanogaster transcription ... 207 2e-54
U02879-1|AAA68626.1| 315|Drosophila melanogaster transcription ... 207 2e-54
M91081-1|AAA28929.1| 315|Drosophila melanogaster RNA polymerase... 207 2e-54
M88164-1|AAA28930.1| 315|Drosophila melanogaster transcription ... 207 2e-54
BT015269-1|AAT94498.1| 315|Drosophila melanogaster LD24035p pro... 207 2e-54
BT011459-1|AAR99117.1| 315|Drosophila melanogaster RE29729p pro... 207 2e-54
AE014134-1887|AAF52951.1| 315|Drosophila melanogaster CG5193-PA... 207 2e-54
AE014298-2462|AAN09418.1| 470|Drosophila melanogaster CG4678-PB... 27 4.4
AE014298-2461|AAF48652.2| 470|Drosophila melanogaster CG4678-PA... 27 4.4
BT003261-1|AAO25018.1| 569|Drosophila melanogaster LD23656p pro... 27 7.8
AY075311-1|AAL68178.1| 223|Drosophila melanogaster AT31946p pro... 27 7.8
AY051639-1|AAK93063.1| 563|Drosophila melanogaster GM13904p pro... 27 7.8
AE014298-877|AAF46154.1| 1543|Drosophila melanogaster CG15894-PA... 27 7.8
AE014297-4689|AAF57103.1| 270|Drosophila melanogaster CG15551-P... 27 7.8
AE014297-4688|AAO41618.1| 238|Drosophila melanogaster CG15551-P... 27 7.8
AE014296-1793|AAN11919.1| 563|Drosophila melanogaster CG32054-P... 27 7.8
AE013599-1893|AAF58247.1| 569|Drosophila melanogaster CG10105-P... 27 7.8
>U35148-1|AAA79093.1| 315|Drosophila melanogaster transcription
factor IIB protein.
Length = 315
Score = 207 bits (506), Expect = 2e-54
Identities = 93/106 (87%), Positives = 99/106 (93%)
Frame = +2
Query: 14 MASTSRMETNKVVCYAHPDAPLIEDYRAGDMICSECGLVVGDRVIDVGSEWRTFSNEKSG 193
MASTSR++ NKV CYAHP++PLIEDYRAGDMICSECGLVVGDRVIDVGSEWRTFSNEKSG
Sbjct: 1 MASTSRLDNNKVCCYAHPESPLIEDYRAGDMICSECGLVVGDRVIDVGSEWRTFSNEKSG 60
Query: 194 VDPSRVGGPENPLLSGGDLSTIIGPGRGDASFDSFGVSKYQNRRNI 331
VDPSRVGGPENPLLSGGDLSTIIGPG G ASFD+FG KYQNRR +
Sbjct: 61 VDPSRVGGPENPLLSGGDLSTIIGPGTGSASFDAFGAPKYQNRRTM 106
>U02879-1|AAA68626.1| 315|Drosophila melanogaster transcription
factor IIB protein.
Length = 315
Score = 207 bits (506), Expect = 2e-54
Identities = 93/106 (87%), Positives = 99/106 (93%)
Frame = +2
Query: 14 MASTSRMETNKVVCYAHPDAPLIEDYRAGDMICSECGLVVGDRVIDVGSEWRTFSNEKSG 193
MASTSR++ NKV CYAHP++PLIEDYRAGDMICSECGLVVGDRVIDVGSEWRTFSNEKSG
Sbjct: 1 MASTSRLDNNKVCCYAHPESPLIEDYRAGDMICSECGLVVGDRVIDVGSEWRTFSNEKSG 60
Query: 194 VDPSRVGGPENPLLSGGDLSTIIGPGRGDASFDSFGVSKYQNRRNI 331
VDPSRVGGPENPLLSGGDLSTIIGPG G ASFD+FG KYQNRR +
Sbjct: 61 VDPSRVGGPENPLLSGGDLSTIIGPGTGSASFDAFGAPKYQNRRTM 106
>M91081-1|AAA28929.1| 315|Drosophila melanogaster RNA polymerase II
transcriptionfactor protein.
Length = 315
Score = 207 bits (506), Expect = 2e-54
Identities = 93/106 (87%), Positives = 99/106 (93%)
Frame = +2
Query: 14 MASTSRMETNKVVCYAHPDAPLIEDYRAGDMICSECGLVVGDRVIDVGSEWRTFSNEKSG 193
MASTSR++ NKV CYAHP++PLIEDYRAGDMICSECGLVVGDRVIDVGSEWRTFSNEKSG
Sbjct: 1 MASTSRLDNNKVCCYAHPESPLIEDYRAGDMICSECGLVVGDRVIDVGSEWRTFSNEKSG 60
Query: 194 VDPSRVGGPENPLLSGGDLSTIIGPGRGDASFDSFGVSKYQNRRNI 331
VDPSRVGGPENPLLSGGDLSTIIGPG G ASFD+FG KYQNRR +
Sbjct: 61 VDPSRVGGPENPLLSGGDLSTIIGPGTGSASFDAFGAPKYQNRRTM 106
>M88164-1|AAA28930.1| 315|Drosophila melanogaster transcription
factor IIB protein.
Length = 315
Score = 207 bits (506), Expect = 2e-54
Identities = 93/106 (87%), Positives = 99/106 (93%)
Frame = +2
Query: 14 MASTSRMETNKVVCYAHPDAPLIEDYRAGDMICSECGLVVGDRVIDVGSEWRTFSNEKSG 193
MASTSR++ NKV CYAHP++PLIEDYRAGDMICSECGLVVGDRVIDVGSEWRTFSNEKSG
Sbjct: 1 MASTSRLDNNKVCCYAHPESPLIEDYRAGDMICSECGLVVGDRVIDVGSEWRTFSNEKSG 60
Query: 194 VDPSRVGGPENPLLSGGDLSTIIGPGRGDASFDSFGVSKYQNRRNI 331
VDPSRVGGPENPLLSGGDLSTIIGPG G ASFD+FG KYQNRR +
Sbjct: 61 VDPSRVGGPENPLLSGGDLSTIIGPGTGSASFDAFGAPKYQNRRTM 106
>BT015269-1|AAT94498.1| 315|Drosophila melanogaster LD24035p
protein.
Length = 315
Score = 207 bits (506), Expect = 2e-54
Identities = 93/106 (87%), Positives = 99/106 (93%)
Frame = +2
Query: 14 MASTSRMETNKVVCYAHPDAPLIEDYRAGDMICSECGLVVGDRVIDVGSEWRTFSNEKSG 193
MASTSR++ NKV CYAHP++PLIEDYRAGDMICSECGLVVGDRVIDVGSEWRTFSNEKSG
Sbjct: 1 MASTSRLDNNKVCCYAHPESPLIEDYRAGDMICSECGLVVGDRVIDVGSEWRTFSNEKSG 60
Query: 194 VDPSRVGGPENPLLSGGDLSTIIGPGRGDASFDSFGVSKYQNRRNI 331
VDPSRVGGPENPLLSGGDLSTIIGPG G ASFD+FG KYQNRR +
Sbjct: 61 VDPSRVGGPENPLLSGGDLSTIIGPGTGSASFDAFGAPKYQNRRTM 106
>BT011459-1|AAR99117.1| 315|Drosophila melanogaster RE29729p
protein.
Length = 315
Score = 207 bits (506), Expect = 2e-54
Identities = 93/106 (87%), Positives = 99/106 (93%)
Frame = +2
Query: 14 MASTSRMETNKVVCYAHPDAPLIEDYRAGDMICSECGLVVGDRVIDVGSEWRTFSNEKSG 193
MASTSR++ NKV CYAHP++PLIEDYRAGDMICSECGLVVGDRVIDVGSEWRTFSNEKSG
Sbjct: 1 MASTSRLDNNKVCCYAHPESPLIEDYRAGDMICSECGLVVGDRVIDVGSEWRTFSNEKSG 60
Query: 194 VDPSRVGGPENPLLSGGDLSTIIGPGRGDASFDSFGVSKYQNRRNI 331
VDPSRVGGPENPLLSGGDLSTIIGPG G ASFD+FG KYQNRR +
Sbjct: 61 VDPSRVGGPENPLLSGGDLSTIIGPGTGSASFDAFGAPKYQNRRTM 106
>AE014134-1887|AAF52951.1| 315|Drosophila melanogaster CG5193-PA
protein.
Length = 315
Score = 207 bits (506), Expect = 2e-54
Identities = 93/106 (87%), Positives = 99/106 (93%)
Frame = +2
Query: 14 MASTSRMETNKVVCYAHPDAPLIEDYRAGDMICSECGLVVGDRVIDVGSEWRTFSNEKSG 193
MASTSR++ NKV CYAHP++PLIEDYRAGDMICSECGLVVGDRVIDVGSEWRTFSNEKSG
Sbjct: 1 MASTSRLDNNKVCCYAHPESPLIEDYRAGDMICSECGLVVGDRVIDVGSEWRTFSNEKSG 60
Query: 194 VDPSRVGGPENPLLSGGDLSTIIGPGRGDASFDSFGVSKYQNRRNI 331
VDPSRVGGPENPLLSGGDLSTIIGPG G ASFD+FG KYQNRR +
Sbjct: 61 VDPSRVGGPENPLLSGGDLSTIIGPGTGSASFDAFGAPKYQNRRTM 106
>AE014298-2462|AAN09418.1| 470|Drosophila melanogaster CG4678-PB,
isoform B protein.
Length = 470
Score = 27.5 bits (58), Expect = 4.4
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +2
Query: 194 VDPSRVGGPENPLLSGGDLSTIIGPGRGD 280
+ PS+VG P NP SG T++ +GD
Sbjct: 441 LQPSKVGNPTNPRWSGVTTGTMLLKTQGD 469
>AE014298-2461|AAF48652.2| 470|Drosophila melanogaster CG4678-PA,
isoform A protein.
Length = 470
Score = 27.5 bits (58), Expect = 4.4
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +2
Query: 194 VDPSRVGGPENPLLSGGDLSTIIGPGRGD 280
+ PS+VG P NP SG T++ +GD
Sbjct: 441 LQPSKVGNPTNPRWSGVTTGTMLLKTQGD 469
>BT003261-1|AAO25018.1| 569|Drosophila melanogaster LD23656p
protein.
Length = 569
Score = 26.6 bits (56), Expect = 7.8
Identities = 17/57 (29%), Positives = 29/57 (50%)
Frame = +2
Query: 152 VGSEWRTFSNEKSGVDPSRVGGPENPLLSGGDLSTIIGPGRGDASFDSFGVSKYQNR 322
+GS+ T +K+ + + V +N L+GG G G GD+ D+ V +Y+ R
Sbjct: 329 LGSKSMTSVEDKTALSDAAVKALQNISLNGGTSDPGGGGGGGDSPHDN--VKEYEKR 383
>AY075311-1|AAL68178.1| 223|Drosophila melanogaster AT31946p
protein.
Length = 223
Score = 26.6 bits (56), Expect = 7.8
Identities = 9/15 (60%), Positives = 12/15 (80%)
Frame = +1
Query: 7 GNHGEHVENGD*QGG 51
GNHGEH ++G +GG
Sbjct: 28 GNHGEHTKHGHHEGG 42
>AY051639-1|AAK93063.1| 563|Drosophila melanogaster GM13904p
protein.
Length = 563
Score = 26.6 bits (56), Expect = 7.8
Identities = 15/41 (36%), Positives = 19/41 (46%), Gaps = 2/41 (4%)
Frame = -3
Query: 300 PKLSNDASPLPGPMIVERSPPDNNGFSG--PPTREGSTPDF 184
P+ + S P P PP GFSG PP ++G P F
Sbjct: 41 PQPGHHQSGYPQPGHSWNPPPPQFGFSGYPPPPQQGYPPQF 81
>AE014298-877|AAF46154.1| 1543|Drosophila melanogaster CG15894-PA
protein.
Length = 1543
Score = 26.6 bits (56), Expect = 7.8
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = -3
Query: 297 KLSNDASPLPGPMIVERSPPDNNGFSGPP 211
+L+ ASP PG + RSP G G P
Sbjct: 478 RLTPTASPKPGRRLTSRSPSPATGAGGGP 506
>AE014297-4689|AAF57103.1| 270|Drosophila melanogaster
CG15551-PA, isoform A protein.
Length = 270
Score = 26.6 bits (56), Expect = 7.8
Identities = 9/15 (60%), Positives = 12/15 (80%)
Frame = +1
Query: 7 GNHGEHVENGD*QGG 51
GNHGEH ++G +GG
Sbjct: 43 GNHGEHTKHGHHEGG 57
>AE014297-4688|AAO41618.1| 238|Drosophila melanogaster
CG15551-PB, isoform B protein.
Length = 238
Score = 26.6 bits (56), Expect = 7.8
Identities = 9/15 (60%), Positives = 12/15 (80%)
Frame = +1
Query: 7 GNHGEHVENGD*QGG 51
GNHGEH ++G +GG
Sbjct: 43 GNHGEHTKHGHHEGG 57
>AE014296-1793|AAN11919.1| 563|Drosophila melanogaster CG32054-PA
protein.
Length = 563
Score = 26.6 bits (56), Expect = 7.8
Identities = 15/41 (36%), Positives = 19/41 (46%), Gaps = 2/41 (4%)
Frame = -3
Query: 300 PKLSNDASPLPGPMIVERSPPDNNGFSG--PPTREGSTPDF 184
P+ + S P P PP GFSG PP ++G P F
Sbjct: 41 PQPGHHQSGYPQPGHSWNPPPPQFGFSGYPPPPQQGYPPQF 81
>AE013599-1893|AAF58247.1| 569|Drosophila melanogaster CG10105-PA
protein.
Length = 569
Score = 26.6 bits (56), Expect = 7.8
Identities = 17/57 (29%), Positives = 29/57 (50%)
Frame = +2
Query: 152 VGSEWRTFSNEKSGVDPSRVGGPENPLLSGGDLSTIIGPGRGDASFDSFGVSKYQNR 322
+GS+ T +K+ + + V +N L+GG G G GD+ D+ V +Y+ R
Sbjct: 329 LGSKSMTSVEDKTALSDAAVKALQNISLNGGTSDPGGGGGGGDSPHDN--VKEYEKR 383
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,868,950
Number of Sequences: 53049
Number of extensions: 372400
Number of successful extensions: 1448
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1391
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1448
length of database: 24,988,368
effective HSP length: 75
effective length of database: 21,009,693
effective search space used: 735339255
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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