Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_N16
         (332 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF022981-12|AAG24202.2|  306|Caenorhabditis elegans Tfii(two)b (...   129   4e-31
AL031629-6|CAA20980.2|  948|Caenorhabditis elegans Hypothetical ...    28   1.4  
Z82095-2|CAB05027.2|  602|Caenorhabditis elegans Hypothetical pr...    27   3.3  
Z81050-13|CAB02857.3|  448|Caenorhabditis elegans Hypothetical p...    27   3.3  
U41557-6|AAA83307.1|  589|Caenorhabditis elegans Collagen sequen...    27   4.3  
AF000298-11|AAM97960.1|  518|Caenorhabditis elegans Prion-like-(...    26   7.5  
AF000298-10|AAM97961.1|  539|Caenorhabditis elegans Prion-like-(...    26   7.5  
AF000298-8|AAC48255.2|  524|Caenorhabditis elegans Prion-like-(q...    26   7.5  
U28739-11|AAR25657.1|  487|Caenorhabditis elegans Hypothetical p...    25   10.0 
U28739-10|AAR25656.1|  683|Caenorhabditis elegans Hypothetical p...    25   10.0 
AL031632-3|CAA21006.1|  283|Caenorhabditis elegans Hypothetical ...    25   10.0 

>AF022981-12|AAG24202.2|  306|Caenorhabditis elegans Tfii(two)b
           (general transcriptionfactor) protein 1 protein.
          Length = 306

 Score =  129 bits (312), Expect = 4e-31
 Identities = 57/83 (68%), Positives = 67/83 (80%)
 Frame = +2

Query: 47  VVCYAHPDAPLIEDYRAGDMICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPEN 226
           V C  HPD  LIED+RAGD++C  CGLVVGDR++DVG+EWR+FSNE+SG DPSRVG PEN
Sbjct: 5   VQCPIHPDVHLIEDHRAGDLVCPACGLVVGDRLVDVGTEWRSFSNERSGNDPSRVGAPEN 64

Query: 227 PLLSGGDLSTIIGPGRGDASFDS 295
           PLLSGGDLST I  G G +  D+
Sbjct: 65  PLLSGGDLSTTIAVGFGGSDSDN 87


>AL031629-6|CAA20980.2|  948|Caenorhabditis elegans Hypothetical
           protein Y106G6D.7 protein.
          Length = 948

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 13/33 (39%), Positives = 16/33 (48%)
 Frame = -3

Query: 288 NDASPLPGPMIVERSPPDNNGFSGPPTREGSTP 190
           N  +PLP       + P  NGF+G P R G  P
Sbjct: 737 NGTAPLPSGQQNGMNVPPPNGFNGAPMRGGFVP 769


>Z82095-2|CAB05027.2|  602|Caenorhabditis elegans Hypothetical
           protein ZK849.4 protein.
          Length = 602

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 6/45 (13%)
 Frame = -3

Query: 303 TPKLSNDASPLPGPMIVERSP-----PDNNGFSGPPT-REGSTPD 187
           +P + N+A P P P    R+P     P  NG + P + R+   PD
Sbjct: 555 SPVIDNEAQPSPPPAEANRAPIPNQQPQVNGNAAPASPRQAKVPD 599


>Z81050-13|CAB02857.3|  448|Caenorhabditis elegans Hypothetical
           protein C50B6.8 protein.
          Length = 448

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
 Frame = -3

Query: 294 LSNDASPLPG-PMIVERSPPDNNGFSGPPTREGSTPD 187
           L++ + P+PG P+  + SPP    F   PT    +PD
Sbjct: 221 LADRSGPMPGWPLKTQSSPPKIPEFGKKPTGPAYSPD 257


>U41557-6|AAA83307.1|  589|Caenorhabditis elegans Collagen sequence
           x-hybridizingprotein 1 protein.
          Length = 589

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 16/40 (40%), Positives = 16/40 (40%)
 Frame = -3

Query: 315 WYFDTPKLSNDASPLPGPMIVERSPPDNNGFSGPPTREGS 196
           W F  PK S  A P P        PP     SGPP  E S
Sbjct: 546 WIFGRPKPSGPAGPAP-----SGEPPGPFDPSGPPPSESS 580


>AF000298-11|AAM97960.1|  518|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform b protein.
          Length = 518

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 15/38 (39%), Positives = 17/38 (44%)
 Frame = -3

Query: 303 TPKLSNDASPLPGPMIVERSPPDNNGFSGPPTREGSTP 190
           +P L+   SP P P     SPP     S PP   GS P
Sbjct: 246 SPPLAGSGSPPPPP--AAGSPPPPRTGSPPPPPTGSPP 281


>AF000298-10|AAM97961.1|  539|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform c protein.
          Length = 539

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 15/38 (39%), Positives = 17/38 (44%)
 Frame = -3

Query: 303 TPKLSNDASPLPGPMIVERSPPDNNGFSGPPTREGSTP 190
           +P L+   SP P P     SPP     S PP   GS P
Sbjct: 267 SPPLAGSGSPPPPP--AAGSPPPPRTGSPPPPPTGSPP 302


>AF000298-8|AAC48255.2|  524|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform a protein.
          Length = 524

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 15/38 (39%), Positives = 17/38 (44%)
 Frame = -3

Query: 303 TPKLSNDASPLPGPMIVERSPPDNNGFSGPPTREGSTP 190
           +P L+   SP P P     SPP     S PP   GS P
Sbjct: 252 SPPLAGSGSPPPPP--AAGSPPPPRTGSPPPPPTGSPP 287


>U28739-11|AAR25657.1|  487|Caenorhabditis elegans Hypothetical
           protein C17G10.6b protein.
          Length = 487

 Score = 25.4 bits (53), Expect = 10.0
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = +1

Query: 7   GNHGEHVENGD*QGGVLRASRRTSH 81
           G H + VENGD  GG +     T H
Sbjct: 127 GKHEDLVENGDGGGGFVAGDEGTRH 151


>U28739-10|AAR25656.1|  683|Caenorhabditis elegans Hypothetical
           protein C17G10.6a protein.
          Length = 683

 Score = 25.4 bits (53), Expect = 10.0
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = +1

Query: 7   GNHGEHVENGD*QGGVLRASRRTSH 81
           G H + VENGD  GG +     T H
Sbjct: 178 GKHEDLVENGDGGGGFVAGDEGTRH 202


>AL031632-3|CAA21006.1|  283|Caenorhabditis elegans Hypothetical
           protein Y32B12B.3 protein.
          Length = 283

 Score = 25.4 bits (53), Expect = 10.0
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = -2

Query: 331 YIPPVLVFRYTKTVK*CITPPWT 263
           +I P+LVFRY  TV      PWT
Sbjct: 227 HIIPLLVFRYFPTVNYYNFGPWT 249


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,407,962
Number of Sequences: 27780
Number of extensions: 179039
Number of successful extensions: 630
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 546
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 624
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 408121444
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)