Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_N15
(365 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC11C11.04c |alp1||tubulin specific chaperone cofactor D |Schi... 27 0.69
SPAC16C9.07 |ppk5|SPAC2G11.01, mug189|serine/threonine protein k... 27 0.91
SPBC17D11.07c |rpn2||19S proteasome regulatory subunit Rpn2|Schi... 25 2.8
SPAC10F6.02c |prp22||ATP-dependent RNA helicase Prp22|Schizosacc... 25 2.8
SPBC1706.01 |tea4|wsh3|tip elongation aberrant protein Tea4|Schi... 25 4.9
SPBC17D1.01 ||SPBC17D11.09|sequence orphan|Schizosaccharomyces p... 25 4.9
SPAPB1E7.09 |ogm2|oma2|protein O-mannosyltransferase Ogm2|Schizo... 24 6.4
SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit ... 24 6.4
SPAC1F5.06 |||heat shock protein Lhs1 |Schizosaccharomyces pombe... 24 8.5
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha... 24 8.5
SPBC660.10 |||translation elongation factor G|Schizosaccharomyce... 24 8.5
>SPBC11C11.04c |alp1||tubulin specific chaperone cofactor D
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1107
Score = 27.5 bits (58), Expect = 0.69
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = +3
Query: 126 ENMEILPVTNQFNVGFTSEKAWNG 197
ENM + P+ N N+ TS W+G
Sbjct: 361 ENMFLNPIENTVNISITSPLVWHG 384
>SPAC16C9.07 |ppk5|SPAC2G11.01, mug189|serine/threonine protein
kinase Ppk5 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 836
Score = 27.1 bits (57), Expect = 0.91
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = -1
Query: 203 CRPIPRFFTGESDVKLVRDRQYLHVFQIFTYIVHSI 96
C P+ T + V L+ RQY H +I T +++S+
Sbjct: 37 CSPLRAHSTFKEPVFLLSQRQYSHNSKILTELINSV 72
>SPBC17D11.07c |rpn2||19S proteasome regulatory subunit
Rpn2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 965
Score = 25.4 bits (53), Expect = 2.8
Identities = 12/26 (46%), Positives = 14/26 (53%)
Frame = -1
Query: 209 SPCRPIPRFFTGESDVKLVRDRQYLH 132
SPC I R +GE VK R+ Y H
Sbjct: 300 SPCGYIIRILSGEQTVKYDREFLYAH 325
>SPAC10F6.02c |prp22||ATP-dependent RNA helicase
Prp22|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1168
Score = 25.4 bits (53), Expect = 2.8
Identities = 8/26 (30%), Positives = 17/26 (65%)
Frame = +3
Query: 84 FIRYYRVYNISKNLENMEILPVTNQF 161
F ++ +SK +N+++LP+ N+F
Sbjct: 1127 FFKFANANQVSKTKKNLKVLPLYNRF 1152
>SPBC1706.01 |tea4|wsh3|tip elongation aberrant protein
Tea4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 809
Score = 24.6 bits (51), Expect = 4.9
Identities = 20/84 (23%), Positives = 39/84 (46%), Gaps = 2/84 (2%)
Frame = +3
Query: 108 NIS-KNLENMEILPVTNQFNVGFTSEKAWNGPTWREAPVPMPTEAALAQRLE-SELRAAK 281
N+S ++L+ +E+ P+ + ++ SEK + + + PT+ E SE R
Sbjct: 488 NLSVQSLKQLEVYPIRHSVSIEMPSEKLLSPRLYSSSTPSSPTKGFQKDDEEDSENRKQA 547
Query: 282 GASELATAEVLVPAELLARASMQT 353
EL+ + +L L +S Q+
Sbjct: 548 DKVELSPSSLLRQMSLPVDSSSQS 571
>SPBC17D1.01 ||SPBC17D11.09|sequence orphan|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 584
Score = 24.6 bits (51), Expect = 4.9
Identities = 12/40 (30%), Positives = 20/40 (50%)
Frame = +3
Query: 75 YVIFIRYYRVYNISKNLENMEILPVTNQFNVGFTSEKAWN 194
Y++ IRY V+N+ + ++ + VG KAWN
Sbjct: 8 YLLRIRYTYVFNLKVSYQSERRTYGATEHFVGCLVPKAWN 47
>SPAPB1E7.09 |ogm2|oma2|protein O-mannosyltransferase
Ogm2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 739
Score = 24.2 bits (50), Expect = 6.4
Identities = 8/20 (40%), Positives = 13/20 (65%)
Frame = -2
Query: 172 NPTLNWFVTGSISMFSKFLL 113
NP WF T S+ +F+ F++
Sbjct: 597 NPVAYWFATSSLIVFALFVV 616
>SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit
Bgs4|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1955
Score = 24.2 bits (50), Expect = 6.4
Identities = 9/29 (31%), Positives = 16/29 (55%)
Frame = -1
Query: 110 IVHSIIPYKDNVMSSATGTYTRKISQVSF 24
+V PY+++ +S GTY K+ + F
Sbjct: 958 LVEENAPYENDSVSEKEGTYKSKVDDLPF 986
>SPAC1F5.06 |||heat shock protein Lhs1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 848
Score = 23.8 bits (49), Expect = 8.5
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = +3
Query: 258 ESELRAAKGASELATAEVLVPAELLARASMQTLAL 362
+ +L+A KGAS +TAE V E T AL
Sbjct: 782 QPKLKAKKGASSSSTAESKVEDETFTNDIEPTTAL 816
>SPBC23E6.09 |ssn6||transcriptional corepressor
Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1102
Score = 23.8 bits (49), Expect = 8.5
Identities = 13/37 (35%), Positives = 18/37 (48%)
Frame = +3
Query: 213 APVPMPTEAALAQRLESELRAAKGASELATAEVLVPA 323
APVP P +AAL + + A G + V +PA
Sbjct: 241 APVPAPNQAALPP-IPPQALPANGTPNTLASPVTLPA 276
>SPBC660.10 |||translation elongation factor G|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 813
Score = 23.8 bits (49), Expect = 8.5
Identities = 17/41 (41%), Positives = 19/41 (46%)
Frame = -2
Query: 223 GTGASLHVGPFHAFSLVNPTLNWFVTGSISMFSKFLLILYT 101
G A L GP H F L N L F T S + + F L L T
Sbjct: 608 GIVAGLSHGPLHGFPLTN--LQSFCTISSFLSNDFPLSLLT 646
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,364,974
Number of Sequences: 5004
Number of extensions: 23936
Number of successful extensions: 79
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 79
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 114084208
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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